View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16110_low_4 (Length: 325)
Name: NF16110_low_4
Description: NF16110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16110_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 307
Target Start/End: Complemental strand, 40917513 - 40917211
Alignment:
| Q |
5 |
gagtgagaagaaaccctaattcctcaattcctccctttcaccatttctttatttgagtagttcttaaatcatagccataggtggtaacttggggcctact |
104 |
Q |
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| T |
40917513 |
gagtgacaagaaaccctaattcctcaattcctccctttcaccatttctttatttgagtagttcttaaatcatagccataggtggtaacttggggcctact |
40917414 |
T |
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| Q |
105 |
aaaaataacttaagaacataaaacattgtttttaattaatctccttcttgcattggagatgctttttggtcactaacatattttaccgtaattctctaca |
204 |
Q |
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| T |
40917413 |
aaaaataacttaagaacataaaacattgtttttaattaatctccttcttgcattggagatgctttttggtcactaacatatttaaccgtaattctctaca |
40917314 |
T |
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| Q |
205 |
atattaagaatggtgacatggacaagatttggaaacaaccttatactttatgcgaatggaaattgtttgatgttgacaggttttcaaatttgtcattcgc |
304 |
Q |
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| T |
40917313 |
atattaagaatggtgacatggacaagatttgtaaacaaccttatgctttatgcgaatggaaattgtttgatgttgacaggttttcaaatttgtcattcgc |
40917214 |
T |
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| Q |
305 |
ttg |
307 |
Q |
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||| |
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| T |
40917213 |
ttg |
40917211 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 14344751 - 14344795
Alignment:
| Q |
90 |
aacttggggcctactaaaaataacttaagaacataaaacattgtt |
134 |
Q |
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| T |
14344751 |
aacttggggcccactaaaagtaactcaagaacataaagcattgtt |
14344795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 50422264 - 50422216
Alignment:
| Q |
90 |
aacttggggcctactaaaaataacttaagaacataaaacattgttttta |
138 |
Q |
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||||||||||| | ||||||||||| |||||||| ||||||| |||||| |
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| T |
50422264 |
aacttggggccaattaaaaataactgaagaacatcaaacatttttttta |
50422216 |
T |
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