View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16111_low_2 (Length: 629)
Name: NF16111_low_2
Description: NF16111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16111_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 17 - 612
Target Start/End: Complemental strand, 38127016 - 38126437
Alignment:
| Q |
17 |
atgaatgacaaaactcttcctcaaaagatttaacattgttacattccgagagtttgattcgaactcaaaacctctagttaagtcttgaagagattcatta |
116 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
38127016 |
atgaatgacaaaattcttcctcaaaagatttaacattgttacattccgagagtttgattcgaactcaaaacctctagttaagcca-gaagagattcatta |
38126918 |
T |
|
| Q |
117 |
tcatctctcatttaggtgttcctggtagaaggtttaagtttgatatatagcacaaacttctttttaaaatgaaaaatctagaagtaaaatatagtctaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| | |
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| T |
38126917 |
tcatctctcatttaggtgttcctggtagaaggtttaagtttgatatatagcacaaactcctttttaaaatgaaaa-tctagaagtaaaatatagtctaga |
38126819 |
T |
|
| Q |
217 |
cacaagatacgcaaagattagaccaatgcttgtactataaacaagaaatcactccaccaaatatgacactccagttatataaccaaaactacaacacaag |
316 |
Q |
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| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38126818 |
cgcaagatacgcaaagattagaccaatgcttgtactatacacaagaaatcactccaccaaatatgacactccagttatataaccaaaactacgacacaag |
38126719 |
T |
|
| Q |
317 |
cagaacctatatatatcattcaaagaaaaaagcagaacctatatataaccaaataattaaacaatcagtgtcaaatgcattccaactaataaggcatgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38126718 |
cagaacctatatatatcattcaaagaaaaaagcagaacctatatataaccaaataattaaacaatcagtgtcaaatgcattccaactaataaggcatgca |
38126619 |
T |
|
| Q |
417 |
tatatttaataaatatttctcaaaaatatggagaaataaaacttaaggaatgtgcattaaaataagtgaactaatcctacatgttataggtttgatctga |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
38126618 |
tatatttaataaatatttctcaaaaatatggagaaataa--------------gaattaaaataagtgaactaatcctacatgttataggtttgatctaa |
38126533 |
T |
|
| Q |
517 |
ggaccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtctaaacttctacttctagtttatatgaagat |
612 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38126532 |
ggaccatgtatacagtagaaaacttgcaaaataagcaacatatgtcaatctatatttctgtttgtctaaacttctacttctagtttatatgaagat |
38126437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 123
Target Start/End: Complemental strand, 38127215 - 38127110
Alignment:
| Q |
21 |
atgacaaaactcttcctcaaaagatttaacattg----ttacattccgagagtttgattcgaactcaaaacctctagttaagtcttgaagagattcatta |
116 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||| || | ||||||||| | |||||||||||||||||||||| |||| || ||||||||||||| |
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| T |
38127215 |
atgacaaaattcttcatcaagagatttaacattaattattgcgttccgagagctggattcgaactcaaaacctctagctaag-ctgaaagagattcatta |
38127117 |
T |
|
| Q |
117 |
tcatctc |
123 |
Q |
| |
|
||||||| |
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|
| T |
38127116 |
tcatctc |
38127110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 15064366 - 15064322
Alignment:
| Q |
17 |
atgaatgacaaaactcttcctcaaaagatttaacattgttacatt |
61 |
Q |
| |
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|||||||| |||||||||| |||||||||||||||||| |||||| |
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|
| T |
15064366 |
atgaatgataaaactcttcttcaaaagatttaacattgatacatt |
15064322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 422 - 479
Target Start/End: Complemental strand, 39708616 - 39708558
Alignment:
| Q |
422 |
ttaataaatatttctcaaaaa-tatggagaaataaaacttaaggaatgtgcattaaaat |
479 |
Q |
| |
|
|||||||| |||||| ||||| ||||||||||||| ||||||||||||||||||||||| |
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|
| T |
39708616 |
ttaataaacatttctgaaaaaatatggagaaataagacttaaggaatgtgcattaaaat |
39708558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 97
Target Start/End: Original strand, 8168877 - 8168951
Alignment:
| Q |
22 |
tgacaaaactcttcctcaaaagatttaacattgttacattccgagagtttgattcgaactcaaaacctctagttaa |
97 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| | ||||| | | || ||||||||||| |||||||||||||| |
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| T |
8168877 |
tgacaaaactctccttcaaaagatttaacattgctgcattctcataattagattcgaactc-aaacctctagttaa |
8168951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 37438270 - 37438311
Alignment:
| Q |
42 |
agatttaacattgttacattccgagagtttgattcgaactca |
83 |
Q |
| |
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|||||||||||||||||||||| |||||| ||||| |||||| |
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| T |
37438270 |
agatttaacattgttacattcccagagttggattcaaactca |
37438311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 7163952 - 7163920
Alignment:
| Q |
22 |
tgacaaaactcttcctcaaaagatttaacattg |
54 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
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|
| T |
7163952 |
tgacaaaactcttcctcaatagatttaacattg |
7163920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 15052066 - 15052033
Alignment:
| Q |
16 |
gatgaatgacaaaactcttcctcaaaagatttaa |
49 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |
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| T |
15052066 |
gatgaatgacaaaactctttctcaaaagatttaa |
15052033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 43346361 - 43346398
Alignment:
| Q |
25 |
caaaactcttcctcaaaagatttaacattgttacattc |
62 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
43346361 |
caaaactcttcctcaagagatttaacattgttgcattc |
43346398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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