View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16111_low_3 (Length: 414)
Name: NF16111_low_3
Description: NF16111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16111_low_3 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 31320077 - 31320476
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320077 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
31320176 |
T |
|
| Q |
112 |
cctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaattgtacacaagaaggattccaaaatcaagta |
211 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31320177 |
cctctttgaaaccttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaatgaaaattgtacacaagaaggattccaaaatcaagta |
31320276 |
T |
|
| Q |
212 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31320277 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
31320376 |
T |
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| Q |
312 |
aaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctgagagattcttgtttga |
411 |
Q |
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| T |
31320377 |
agggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattataacaggatgtaaagctgagagattcttgtttga |
31320476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 31332330 - 31332729
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| | || ||||| |||||||||||||| ||||||||||| | |
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| T |
31332330 |
caggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttc |
31332429 |
T |
|
| Q |
112 |
cctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaattgtacacaagaaggattccaaaatcaagta |
211 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
31332430 |
actctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattccaaaatcaagta |
31332529 |
T |
|
| Q |
212 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31332530 |
ttaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
31332629 |
T |
|
| Q |
312 |
aaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctgagagattcttgtttga |
411 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
31332630 |
agggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattataacaggatgtaaagctgagagattcttgtttga |
31332729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 12 - 411
Target Start/End: Complemental strand, 3593 - 3194
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcatgcataagaacaccacagaatgtgttaaaagaatggtcagatgaacacaaacttcc |
111 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| ||||| | ||||||| | || ||||| |||||||||||||| ||||||||||| | |
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| T |
3593 |
caggttcaacagtaggtggtggttcagctgttaattggtcagcttgcattaaaacaccagaaaaggtgttgaaagaatggtcagagaaacacaaactttc |
3494 |
T |
|
| Q |
112 |
cctctttgaaagcttagagtatctatctgctatggaaaccgtgtgtgagaggattggtgtcaaagaaaattgtacacaagaaggattccaaaatcaagta |
211 |
Q |
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|||||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3493 |
actctttgatagcatagagtatctatctgctatggaaactgtgtgcgagagaattggtgtcaacgaaaattgtacacaagaaggattccaaaatcaagta |
3394 |
T |
|
| Q |
212 |
ttaagaaaagggtgccaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3393 |
ttaagaaaagggtgtcaaaatcttggcttaaaagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaa |
3294 |
T |
|
| Q |
312 |
aaggtgagaaacaagggactcaagctacatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctgagagattcttgtttga |
411 |
Q |
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| || |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
3293 |
agggagagaaacaagggactcaagctacatggcttgtagatgctgttgataaaggtgctgtgattataacaggatgtaaagctgagagattcttgtttga |
3194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 396
Target Start/End: Complemental strand, 33522105 - 33521947
Alignment:
| Q |
243 |
aagttgattatgtgccaagaaattcaccagggaatcattattgtggttcatgtggttatggttgtccaaaaggtga-----gaaacaagggactcaagct |
337 |
Q |
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|||| ||||||||||| ||||||||| ||| | ||||||| |||||||| ||| ||||||||| ||||||| || ||||||||||| | | | |
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| T |
33522105 |
aagtcgattatgtgccgagaaattcatcagagcatcattactgtggttcttgtaactatggttgtacaaaaggagataaacaaaacaagggaccgatgtt |
33522006 |
T |
|
| Q |
338 |
acatggcttgtagatgctgttgaaaaagatgctgtgataataacaggatgcaaagctga |
396 |
Q |
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||||||||||| |||||||| ||| | | |||||| ||| ||||| ||||||||||||| |
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| T |
33522005 |
acatggcttgtcgatgctgtggaacacggtgctgtaatactaacaagatgcaaagctga |
33521947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 56
Target Start/End: Complemental strand, 33522336 - 33522292
Alignment:
| Q |
12 |
caggttcaacagtaggtggtggttcagctgtgaattggtcagcat |
56 |
Q |
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||||||||||| | ||||||||||| ||||| ||||||||||||| |
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| T |
33522336 |
caggttcaacaattggtggtggttctgctgttaattggtcagcat |
33522292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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