View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16111_low_4 (Length: 341)
Name: NF16111_low_4
Description: NF16111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16111_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 319
Target Start/End: Original strand, 20222822 - 20223131
Alignment:
| Q |
10 |
catcatcactttctctacaaccgcacatccccaccttcatatccgccacgaccgaactcgccaccatcttcgaacaacaacctggcgccggtagctcctg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20222822 |
catcatcactttctctacaaccgcacatccccaccttcatatccgccacgaccgaactcgccaccatcttcgaacaacaacctggcgccggtagctcctg |
20222921 |
T |
|
| Q |
110 |
cgaaaaccactcctctcttccggccacaaaccccaccttcccctcacaatccatcaaagtgaaaacccctctccaccctttcaccaccacattccacgtc |
209 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
20222922 |
cgaaaaccactcctctcttccggcaacaaaccccaccttcccctcataatccatcaaagtgaaaactcctctccaccctttcaccactacattccacgtc |
20223021 |
T |
|
| Q |
210 |
accttcaccacctcctcaaaaccgttgttcttcaccgcaaccccgctttcaaagctaacgacaaaacggaacacgccgggagggtccaccaccagtgctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20223022 |
accttcaccacctcctcaaaaccgttgttcttcaccacaaccccgctttcaaagctaacgacaaaacggaacacgccgggagggtccaccaccagtgctt |
20223121 |
T |
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| Q |
310 |
ctactggtct |
319 |
Q |
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|||||||||| |
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| T |
20223122 |
ctactggtct |
20223131 |
T |
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