View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16111_low_5 (Length: 320)
Name: NF16111_low_5
Description: NF16111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16111_low_5 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 305
Target Start/End: Original strand, 25816110 - 25816407
Alignment:
| Q |
8 |
agagaagaaacataacaatgaaatacagcgagatataacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcga |
107 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25816110 |
agagaagaaacagaacaatgaaatacaacgagatatcacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcga |
25816209 |
T |
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| Q |
108 |
cggctgcaaggaagtaggcataggttcacgttacaaatgcagcatttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccat |
207 |
Q |
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||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25816210 |
cggttgcaacgaagtaggcataggttcacgttacaaatgcagcatttgtgacaatgaccttcacacacactgcacaataccttctaccacactcttccat |
25816309 |
T |
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| Q |
208 |
gcgttctacacaaaatgcaccttccaaacccaccaggaaacacgccgcgttactgcaacgtgaacaggtttgtataccactgcaaatcatgtggattt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
25816310 |
gcgttctacacaaaatgcaccttccaaacccaccaggaaacacgccgcgttactgcgacgtgaacgggtttgtataccactgcaaatcatgtggattt |
25816407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 25802017 - 25802239
Alignment:
| Q |
8 |
agagaagaaacataacaatgaaatacagcgagatataacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcga |
107 |
Q |
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|||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25802017 |
agagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcga |
25802116 |
T |
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| Q |
108 |
cggctgcaaggaagtaggcataggttcacgttacaaatgcagcatttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccat |
207 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25802117 |
cggctgcaaagaaataggcataggttcacgttacaaatgcagcatctgcgactacgaccttcacacacactgcgcaataccttccaccacactcttccat |
25802216 |
T |
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| Q |
208 |
gcgttctacacaaaatgcacctt |
230 |
Q |
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| T |
25802217 |
ccattttacacaaaatgcacctt |
25802239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 112507 - 112288
Alignment:
| Q |
15 |
aaacataacaatgaaatacagcgagatataacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggctgc |
114 |
Q |
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||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
112507 |
aaacagaacaatgaaatacagtgagatatcacatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcgatggctgc |
112408 |
T |
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| Q |
115 |
aaggaagtaggcataggttcacgttacaaatgcagcatttgtgactatgaccttcacacacactgcgcaataccttctaccacactcttccatgcgttct |
214 |
Q |
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|| ||| ||||||| | ||||||||| ||||||||||| || ||||| |||||||| |||||||||||||||||||| |||||||||||| || | || | |
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| T |
112407 |
aaagaaataggcatcgattcacgttaaaaatgcagcatctgcgactacgaccttcatacacactgcgcaataccttccaccacactcttcgatccatttt |
112308 |
T |
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| Q |
215 |
acacaaaatgcaccttccaa |
234 |
Q |
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| T |
112307 |
acacaaaatgcaccttccaa |
112288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 172
Target Start/End: Original strand, 12530528 - 12530663
Alignment:
| Q |
37 |
gagatataacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattcaaatgcgacggctgcaaggaagtaggcataggttcac |
136 |
Q |
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||||||| ||||| ||||| | |||||| ||||||| ||| ||||| ||| |||||||||||||| || |||||||| ||| | ||||||||||| | |
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| T |
12530528 |
gagatatctcattttagccatcaaaaacataaactaacatttcaacactccgagtttccattcaaatgtgatggctgcaaagaaattggcataggttcgc |
12530627 |
T |
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| Q |
137 |
gttacaaatgcagcatttgtgactatgaccttcaca |
172 |
Q |
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|||||| |||| ||||||||||||||| ||||||| |
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| T |
12530628 |
gttacagctgcaacatttgtgactatgatcttcaca |
12530663 |
T |
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