View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16111_low_6 (Length: 248)
Name: NF16111_low_6
Description: NF16111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16111_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 234
Target Start/End: Complemental strand, 23586609 - 23586382
Alignment:
| Q |
6 |
agcagcacagatcaaacgttctgtatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgc |
105 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23586609 |
agcatcaccgatcaaacgttctgtatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgc |
23586510 |
T |
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| Q |
106 |
caaacaccaacacatgagtaagttgttcccaaatctattccaattgcaggtccttcaccttttccagccataatctctcnnnnnnntttccttctgaatg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
23586509 |
caaacaccaacacatgagtaagttgttcccaaatctattccaattgcaggtccttcgccttttccagccataatctctc-aagaaatttccttctgaatg |
23586411 |
T |
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| Q |
206 |
aaaactagggtttttgtagagttgagaat |
234 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23586410 |
aaaactagggtttttgtagagttgagaat |
23586382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 15 - 184
Target Start/End: Complemental strand, 23595433 - 23595264
Alignment:
| Q |
15 |
gatcaaacgttctgtatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgccaaacacca |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23595433 |
gatcaaacgttctgtatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgccaaacacca |
23595334 |
T |
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| Q |
115 |
acacatgagtaagttgttcccaaatctattccaattgcaggtccttcaccttttccagccataatctctc |
184 |
Q |
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| T |
23595333 |
acacatgagtaagttgttcccaaatctattccaattgcaggtccttctccttttccagccataatctctc |
23595264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 29 - 177
Target Start/End: Original strand, 8104103 - 8104251
Alignment:
| Q |
29 |
tatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgccaaacaccaacacatgagtaagt |
128 |
Q |
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|||||||||||||||||||||| ||||| ||||| || || |||||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| || |
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| T |
8104103 |
tatcagtgaaagcaacataagacggtgtcgttctgttcccttgatcattagcaatgatctcaacacgatcgtgttgccatactccaacacacgagtacgt |
8104202 |
T |
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| Q |
129 |
tgttcccaaatctattccaattgcaggtccttcaccttttccagccata |
177 |
Q |
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| T |
8104203 |
tgttcccagatctattccgattgcaggaccctcacccttgccagccata |
8104251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 29 - 176
Target Start/End: Complemental strand, 8016357 - 8016210
Alignment:
| Q |
29 |
tatcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgccaaacaccaacacatgagtaagt |
128 |
Q |
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|||||||||||||||||||||| || || |||| || || |||||||| || ||||| ||||||||||| |||||||| || |||||||| ||||| || |
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| T |
8016357 |
tatcagtgaaagcaacataagacggcgtcgttcggttcccttgatcattagcaatgatctcaacacgatcgtgttgccatactccaacacacgagtacgt |
8016258 |
T |
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| Q |
129 |
tgttcccaaatctattccaattgcaggtccttcaccttttccagccat |
176 |
Q |
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|||||||| ||||||||| |||||||| ||||| |||||||| ||||| |
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| T |
8016257 |
tgttcccagatctattccgattgcaggaccttctccttttccggccat |
8016210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 39987055 - 39987149
Alignment:
| Q |
82 |
atgatttcaacacgatcatgttgccaaacaccaacacatgagtaagttgttcccaaatctattccaattgcaggtccttcaccttttccagccat |
176 |
Q |
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|||||||||||||| ||||||||||| ||||| || |||||||| || ||||| | ||| ||||| || || |||||||| || ||||| ||||| |
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| T |
39987055 |
atgatttcaacacggtcatgttgccatacaccgacgcatgagtatgtggttccaagatcgattccgatcgctggtccttctccctttccggccat |
39987149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 8655388 - 8655435
Alignment:
| Q |
30 |
atcagtgaaagcaacataagaaggtgtagttctattaccctgatcatt |
77 |
Q |
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| T |
8655388 |
atcagtgaaagcaacaacagaaggtgtagttctattgccttgatcatt |
8655435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 10493059 - 10493017
Alignment:
| Q |
35 |
tgaaagcaacataagaaggtgtagttctattaccctgatcatt |
77 |
Q |
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||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
10493059 |
tgaaagcaacaaaagaaggtgtagttctatttccttgatcatt |
10493017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 13332208 - 13332166
Alignment:
| Q |
35 |
tgaaagcaacataagaaggtgtagttctattaccctgatcatt |
77 |
Q |
| |
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||||||||||| ||||||||||||||||||| || |||||||| |
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| T |
13332208 |
tgaaagcaacaaaagaaggtgtagttctatttccttgatcatt |
13332166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 17716192 - 17716096
Alignment:
| Q |
40 |
gcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgccaaacaccaacacatgagtaagttgttccca |
136 |
Q |
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||||| ||||| ||||||||||| ||||| || || || || |||||||||||||| ||||||||||| ||||| || |||||||| || ||||||| |
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| T |
17716192 |
gcaacgtaagatggtgtagttctgttaccttggtcgttggcgatgatttcaacacggtcatgttgccatacacctacgcatgagtatgtggttccca |
17716096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 12244465 - 12244400
Alignment:
| Q |
31 |
tcagtgaaagcaacataagaaggtgtagttctattaccctgatcatttgctatgatttcaacacga |
96 |
Q |
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| T |
12244465 |
tcagtgaaagcaacacaagaaggtgttgttctgttgccctgatcgttgtgaatgatttcaacacga |
12244400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 17666182 - 17666094
Alignment:
| Q |
46 |
taagaaggtgtagttctattaccctgatcatttgctatgatttcaacacgatcatgttgccaaacaccaacacatgagtaagttgttcc |
134 |
Q |
| |
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||||| ||||| ||||| ||||| || || || || |||||||||||||| ||||||| ||| ||||| || |||||||| || ||||| |
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| T |
17666182 |
taagacggtgtggttctgttaccttggtcgttggcgatgatttcaacacggtcatgtttccatacaccgacgcatgagtatgtggttcc |
17666094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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