View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_12 (Length: 427)
Name: NF16112_high_12
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 23 - 415
Target Start/End: Complemental strand, 36336227 - 36335835
Alignment:
| Q |
23 |
aagggttgggtagctcaactagttcaagctaagggttaaattattggaggtcttcagatcctcgtaacgaagaaaactaacataacatttaacatattat |
122 |
Q |
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| T |
36336227 |
aagggttgggtagctcaactagttcaagctaagggttaaattattggaggtcttcagatcctcgtaacgaaaaaaactaacataacatttaacatattat |
36336128 |
T |
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| Q |
123 |
ttgtcattnnnnnnnngtgatttatattctgaagtagtttaatagaattgaatttgaaaaacttgagaatataaaagttgggacatgtaaatgattgctt |
222 |
Q |
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| T |
36336127 |
ttgtcattaaaaaaaagtgatttatattctgaagtagtttaatagaattgaatttgaaacacttcagaatacaaaagttgggacatgtaaatgattgctt |
36336028 |
T |
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| Q |
223 |
gcatattactgaaacagttagttttgataagaattttgacttgtccagttcttggggtttgaaaagctgtagctgtgatagacttttgagtatgatgtac |
322 |
Q |
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| T |
36336027 |
gcatattactgaaacagttagttttgataagaattttgacttgtccagttcttggggtttgaaaagctgtagctgtgatagacttttgagtatgatgtac |
36335928 |
T |
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| Q |
323 |
atatataggattgtggattactagtttccttcttttcaattaagcaactatgtgtaggctgattatatcagctccatcttctgcaggtatatt |
415 |
Q |
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| T |
36335927 |
atatataggattgtggattactagtttccttcttttcaattaagcaactatgtgtaggctgattatatcagctccatcttctgcaggtatatt |
36335835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Complemental strand, 26940215 - 26940165
Alignment:
| Q |
25 |
gggttgggtagctcaactagttcaagctaagggttaaattattggaggtct |
75 |
Q |
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| T |
26940215 |
gggttgggtagatcaactggttcgagctaagggttaaagaattggaggtct |
26940165 |
T |
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