View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_15 (Length: 397)
Name: NF16112_high_15
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 127101 - 126734
Alignment:
| Q |
14 |
caagtatgtcacgtcaaaggtggtatactgacacacaaaaagagatagaaacagtacatgctgaaagtaataaaatagccactttgagaagctcacatga |
113 |
Q |
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| T |
127101 |
caagtatgtcacgtcaaaggtggtatactgacacacaaaaagagatagaaacagtacatgctgaaagtaataaaatagccactttgagaagctcacatga |
127002 |
T |
|
| Q |
114 |
aaccaggaagggttggttctgaagcagaatgagttggaatgtactgatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
127001 |
aaccaggaagggttggttctgaagcagaatgagttggaatgtactgatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaatc |
126902 |
T |
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| Q |
214 |
gcatacagataagctggatttgtgggggtcatcagcattccctgcataatgtagctataaatactcataacataggaagaaaagatgtcataaatactca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
126901 |
gcatacagataagctggatttgtgggggtcatcagcattccctgcataatgtagctataaatactcataacataggaagaaaagatgtcataaatactca |
126802 |
T |
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| Q |
314 |
taaaagtaattgaagtatgtttgcagttaaaaaatcaaaatcaaatccttacaacattagcatttcat |
381 |
Q |
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| T |
126801 |
taaaagtaattgaagtatgtttgcagttaaaaaatcaaaatcaaatccttacaacattagcatttcat |
126734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 14 - 381
Target Start/End: Complemental strand, 33058779 - 33058415
Alignment:
| Q |
14 |
caagtatgtcacgtcaaaggtggtatactgacacacaaaaagagatagaaacagtacatgctgaaagtaataaaatagccactttgagaagctcacatga |
113 |
Q |
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||||||||||||||||||||| ||||||||||||||| | | ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33058779 |
caagtatgtcacgtcaaaggttgtatactgacacacagagacaga---aaacagtacatgctgaatataataaaatagccactttgagaagctcacatga |
33058683 |
T |
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| Q |
114 |
aaccaggaagggttggttctgaagcagaatgagttggaatgtactgatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaatc |
213 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
33058682 |
aaccaggaaggggtggttctgaagcagaatgagctggaatgtgtggatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaaac |
33058583 |
T |
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| Q |
214 |
gcatacagataagctggatttgtgggggtcatcagcattccctgcataatgtagctataaatactcataacataggaagaaaagatgtcataaatactca |
313 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33058582 |
gcatacagataagctggatttgtagaggtcatcagcattccctgcataatgtagctataaatactcataacataggaagaaaagatgtcataaatactca |
33058483 |
T |
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| Q |
314 |
taaaagtaattgaagtatgtttgcagttaaaaaatcaaaatcaaatccttacaacattagcatttcat |
381 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33058482 |
taaaagtaactgaagcatgtttgcagttaaaaaatcaaaatcaaatccttacaacattagcatttcat |
33058415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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