View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_17 (Length: 383)
Name: NF16112_high_17
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 48900320 - 48899954
Alignment:
| Q |
1 |
tgtaaaataatccaattcttgaaatttttattacacacatgattctatgttttgctatcctctgttagttacagttaattttgctgtttgtcaaggttag |
100 |
Q |
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| T |
48900320 |
tgtaaaataatccaattcttgaaatttttattacacacatgattctatgttttgctatcctctgttagttacagttaattttgctgtttgtcaaggttag |
48900221 |
T |
|
| Q |
101 |
tttgtgaaactctcatttcatagagtgaatcactgaaatgattttatttttcattctgtcatcgtcatattcaatgagtagtaggggaatgcgatgagtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48900220 |
tttgtgaaactctcatttcatagagtgaatcactgaaatgattttatttttcattctgtcatcatcatattcaatgagtagtaggggaatgcgatgagtg |
48900121 |
T |
|
| Q |
201 |
tttatctcaaattgagattctcaatacttttttctagtgaaattattttggaatttttctnnnnnnnntgtgctatctatgtttgttttcttgtttgtga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
48900120 |
tttatctcaaattgagattctcaatacttttttctagtgaaattattttggaatttttctaaaaaaaatgtgctatctatgtttgttttcttgtttgtga |
48900021 |
T |
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| Q |
301 |
tgaaaagaaaaactgtcttacccatttattgggtttgaagttaattttataatggtgcgggtgttat |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48900020 |
tgaaaagaaaaactgtcttacccatttattgggtttgaagttaattttataatggtgcgggtgttat |
48899954 |
T |
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