View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_high_19 (Length: 371)
Name: NF16112_high_19
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 13210795 - 13211139
Alignment:
| Q |
16 |
aaaaccacacaaaacaaacaaaccatgacattctccacgttcctaaacttcctattcccacccccaccatcactattcatcaccaccatgtccgtcataa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
13210795 |
aaaaccacacaaaacaaacaaaccatgacattctccacgttcctaaacttcctattcccacccccaccttcactattcatcaccaccatgtctgtcataa |
13210894 |
T |
|
| Q |
116 |
catgtgtctcacttgcaaacgcaggtatcaatgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaatggtgataagaa |
215 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13210895 |
catgtgtctcccttgcaaacgcaggtatcaatgaagttagagggaagcatttaaactattccaaattctggaacgtagaaaataacaatggtgataagaa |
13210994 |
T |
|
| Q |
216 |
gaagaagaagatgataaaattgtcgagtaaaagtggtatgttattgttatatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13210995 |
gaagaagaagatgataaaattgtcgagtaaaagtggtatgttattgttgtatactcctgcttttgttgctggtgctgcgtcgtttttggtgtttcctgat |
13211094 |
T |
|
| Q |
316 |
gatggttttagatctttggttcttcaaggtgctgttacgtttcat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13211095 |
gatggttttagatctttggttcttcaaggtgctgttacgtttcat |
13211139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Original strand, 13184804 - 13184860
Alignment:
| Q |
147 |
tgaaattagagggaagcatttaaactattccaaattctggaacgtagataataacaa |
203 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| ||||| | | |||||||||| |
|
|
| T |
13184804 |
tgaaattagaggaaagcatttgaattattccaaattttggaatgcaaataataacaa |
13184860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University