View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_high_2 (Length: 825)

Name: NF16112_high_2
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_high_2
NF16112_high_2
[»] chr1 (6 HSPs)
chr1 (1-808)||(47053315-47054118)
chr1 (380-523)||(47063476-47063620)
chr1 (362-474)||(47061837-47061949)
chr1 (429-513)||(47038755-47038839)
chr1 (615-683)||(30557534-30557601)
chr1 (619-678)||(48549004-48549062)
[»] chr7 (7 HSPs)
chr7 (563-683)||(40491608-40491722)
chr7 (564-613)||(45557459-45557508)
chr7 (582-635)||(40728716-40728769)
chr7 (548-613)||(17111939-17112005)
chr7 (563-600)||(1442678-1442715)
chr7 (697-730)||(23441307-23441340)
chr7 (556-613)||(33853418-33853475)
[»] chr5 (7 HSPs)
chr5 (66-128)||(852954-853016)
chr5 (399-475)||(848815-848891)
chr5 (548-683)||(18637314-18637443)
chr5 (591-635)||(8121613-8121657)
chr5 (615-683)||(38845473-38845543)
chr5 (69-119)||(848742-848792)
chr5 (681-722)||(9818717-9818758)
[»] chr8 (3 HSPs)
chr8 (681-730)||(44141111-44141160)
chr8 (563-730)||(32927867-32928036)
chr8 (681-730)||(37684380-37684429)
[»] chr4 (9 HSPs)
chr4 (615-730)||(32818356-32818480)
chr4 (681-730)||(50061689-50061738)
chr4 (616-677)||(16551993-16552053)
chr4 (681-730)||(46344893-46344941)
chr4 (681-725)||(25927288-25927332)
chr4 (564-613)||(33843805-33843854)
chr4 (697-730)||(38498238-38498271)
chr4 (560-597)||(38716698-38716735)
chr4 (615-660)||(45694669-45694713)
[»] chr6 (2 HSPs)
chr6 (681-725)||(5724691-5724735)
chr6 (600-683)||(947597-947679)
[»] chr3 (1 HSPs)
chr3 (615-648)||(35058124-35058157)
[»] chr2 (1 HSPs)
chr2 (633-678)||(15928461-15928506)


Alignment Details
Target: chr1 (Bit Score: 622; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 1 - 808
Target Start/End: Complemental strand, 47054118 - 47053315
Alignment:
Q  1 tcaaaacaaaactaaaaactcaaactgcaggagcaagggaagggctgtcataccagatcagcaactgtaggaaagagtgctttggaaactcccagagaag 100  Q
    ||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47054118 tcaaagcaaaactaaaaactcgaactgcaggagcaaggagagggctgtcataccagatcagcaactgtaggaaagagtgctttggaaactcccagagaag 47054019  T
Q  101 tgcaatcagctggagttcctgtaaagaatttgcataaggaaggacattctgtaagacagtaaaatatgtactactaatgcatttgaaagtaacttatnnn 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       
T  47054018 tgcaatcagctggagttcctgttaagaatttgcataaggaaggacattcagtaagacagtaaaatatgtactactaatgcatttgaaagtaacttataaa 47053919  T
Q  201 nnnnnnnnnnngtagagttacacagnnnnnnnnnnnnaatacaaattaatgaaagggatctgccagaaattcatccgatgaaaaacagtattacaaagat 300  Q
               ||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053918 ataattaaaaagtagagttacacagtttttattttttaatacaaattaatgaaagggatctgccagaaattcatccgatgaaaaacagtattacaaagat 47053819  T
Q  301 atatcaaataatgtatcaacagcatcatcagaaaacacattgattatcaggaagaaggagaaaaaacagaaaacaaaccagaaactgcataggctgtagt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053818 atatcaaataatgtatcaacagcatcatcagaaaacacattgattatcaggaagaaggagaaaaaacagaaaacaaaccagaaactgcataggctgtagt 47053719  T
Q  401 tccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcactggaaattatccaattttgaaattgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053718 tccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcactggaaattatccaattttgaaattgt 47053619  T
Q  501 taactaacacaattaaataaataacagtacaaatcacgagtgttgctagaattgatttt-agtaaattgattctgactaatagtgagttggaggtaaagt 599  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47053618 taactaacacaattaaataaataacagtacaaatcacgagtgttgctagaattgattttgagtaaattgattctgactaatagtgagttggaggtaaagt 47053519  T
Q  600 gattggtgtttggaatttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaatcctaacttcaaatag 699  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47053518 gattggtgtttggaatttggatacattcatgt-aaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaatcctaacttcaaatag 47053420  T
Q  700 ----aatcaattatggaggcaaaatcaattatactnnnnnnnncaacagaataaattgtacatatccggaatcaattttggtctatttaaaagcggaacc 795  Q
        |||||||| ||||||||||||||||| ||||         || | ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  47053419 aatcaatcaattctggaggcaaaatcaattctacta--------aaaaaaaataattgtacatatccggaatcaattttggtctatttaaaagcggaacc 47053328  T
Q  796 aaacataaacata 808  Q
    |||||||||||||    
T  47053327 aaacataaacata 47053315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 380 - 523
Target Start/End: Complemental strand, 47063620 - 47063476
Alignment:
Q  380 agaaactgcataggctgtagttccatcaatgtgaactttcttggcagctatagggtgaagcc-atgtaatactgtgactcacagctgatttctcactgga 478  Q
    |||||||||||||||||| |||||||||| |||| |||||||||||| |||||||||||||| ||||||||| |||||| ||| ||||||||||||  ||    
T  47063620 agaaactgcataggctgtggttccatcaaggtgagctttcttggcagatatagggtgaagccaatgtaataccgtgactaacatctgatttctcacaaga 47063521  T
Q  479 aattatccaattttgaaattgttaactaacacaattaaataaata 523  Q
     || || ||||| |||||| ||| ||||||||||| ||| |||||    
T  47063520 gatgattcaattatgaaatagtttactaacacaataaaacaaata 47063476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 362 - 474
Target Start/End: Complemental strand, 47061949 - 47061837
Alignment:
Q  362 aaaaacagaaaacaaaccagaaactgcataggctgtagttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcaca 461  Q
    ||||||||||| ||||| |||||||||||||||||| ||||||| ||| ||||||||||||||| ||||||||||||||||  | |||| ||||||| |     
T  47061949 aaaaacagaaatcaaactagaaactgcataggctgtggttccattaatatgaactttcttggcatctatagggtgaagccaatttatacagtgactcgcg 47061850  T
Q  462 gctgatttctcac 474  Q
    |||||||||||||    
T  47061849 gctgatttctcac 47061837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 429 - 513
Target Start/End: Complemental strand, 47038839 - 47038755
Alignment:
Q  429 atagggtgaagccatgtaatactgtgactcacagctgatttctcactggaaattatccaattttgaaattgttaactaacacaat 513  Q
    |||||||||||||| |||||||||| ||| || |||||||||| ||||||||||||||||||   |||| |||||||||||||||    
T  47038839 atagggtgaagccaagtaatactgtaactaactgctgatttctgactggaaattatccaattactaaatagttaactaacacaat 47038755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 615 - 683
Target Start/End: Complemental strand, 30557601 - 30557534
Alignment:
Q  615 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaa 683  Q
    ||||||||||||||| ||||| ||||||| ||||||||||  |||| ||| ||||||||||||| ||||    
T  30557601 tttggatacattcatataaaa-gtgagttgaactataaatttgtgtgaaaatcaattctagaatcaaaa 30557534  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 619 - 678
Target Start/End: Original strand, 48549004 - 48549062
Alignment:
Q  619 gatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaat 678  Q
    |||||||| |||||||| ||||||| ||| |||||||||| ||||| |||||||||||||    
T  48549004 gatacatttatgtaaaa-gtgagttgaacaataaatgagtttaaaaatcaattctagaat 48549062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 563 - 683
Target Start/End: Complemental strand, 40491722 - 40491608
Alignment:
Q  563 aaattgattctgactaatagtgagttggaggtaaagtgattggtgtttggaatttggatacattcatgtaaaaagtgagttaaactataaa--tgagtgt 660  Q
    ||||||||| ||||||| ||||||||| |||||||||||||  | |||     |||||||||||||||| |||||||||||||||| ||||  || ||||    
T  40491722 aaattgattttgactaaaagtgagttgaaggtaaagtgatt--tattt-----ttggatacattcatgt-aaaagtgagttaaactttaaatttgtgtgt 40491631  T
Q  661 aaaattcaattctagaataaaaa 683  Q
    |||| ||||||||||||| ||||    
T  40491630 aaaagtcaattctagaatcaaaa 40491608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 564 - 613
Target Start/End: Complemental strand, 45557508 - 45557459
Alignment:
Q  564 aattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 613  Q
    |||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  45557508 aattgattctgactaaaagtgagttgaaggtaaagtgatttgtgtttgga 45557459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 582 - 635
Target Start/End: Complemental strand, 40728769 - 40728716
Alignment:
Q  582 gtgagttggaggtaaagtgattggtgtttggaatttggatacattcatgtaaaa 635  Q
    |||||||| |||||||||||||  |||||||||||||||||||| ||| |||||    
T  40728769 gtgagttgaaggtaaagtgatttatgtttggaatttggatacatacatctaaaa 40728716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 17112005 - 17111939
Alignment:
Q  548 agaattgatttt-agtaaattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 613  Q
    |||||||||||| ||| |||||||| ||||||| | ||| ||| ||||||||||||| |||||||||    
T  17112005 agaattgattttgagtgaattgattttgactaaaattgaattgtaggtaaagtgatttgtgtttgga 17111939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 563 - 600
Target Start/End: Complemental strand, 1442715 - 1442678
Alignment:
Q  563 aaattgattctgactaatagtgagttggaggtaaagtg 600  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  1442715 aaattgattctgactaaaagtgagttgcaggtaaagtg 1442678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 730
Target Start/End: Original strand, 23441307 - 23441340
Alignment:
Q  697 tagaatcaattatggaggcaaaatcaattatact 730  Q
    ||||||||||||||||||||||||||||| ||||    
T  23441307 tagaatcaattatggaggcaaaatcaattgtact 23441340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 556 - 613
Target Start/End: Original strand, 33853418 - 33853475
Alignment:
Q  556 ttttagtaaattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 613  Q
    ||||||| ||||||||||| |||| ||||||||| || ||||||||||  ||||||||    
T  33853418 ttttagtgaattgattctggctaagagtgagttgaagctaaagtgatttatgtttgga 33853475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 852954 - 853016
Alignment:
Q  66 tgtaggaaagagtgctttggaaactcccagagaagtgcaatcagctggagttcctgtaaagaa 128  Q
    ||||||||| |||||| |||||| ||| ||||||||||||||||||||||| |||| ||||||    
T  852954 tgtaggaaatagtgctctggaaattccgagagaagtgcaatcagctggagtacctgcaaagaa 853016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 848815 - 848891
Alignment:
Q  399 gttccatcaatgtgaactttcttggcagctatagggtgaagccatgtaatactgtgactcacagctgatttctcact 475  Q
    ||||||| ||| |||||||  ||||||| |||||| ||||||||||| || |||||||| || ||||||||||||||    
T  848815 gttccatgaatatgaacttgtttggcagatataggatgaagccatgtgatgctgtgactaactgctgatttctcact 848891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 548 - 683
Target Start/End: Complemental strand, 18637443 - 18637314
Alignment:
Q  548 agaattgatttt-agtaaattgattctgactaatagtgagttggaggtaaagtgattggtgtttggaatttggatacattcatgtaaaaagtgagttaaa 646  Q
    |||||||||||| ||| |||||||||| ||||| |||||||||   ||| ||||||| |||||||||       || |||| | | |||| |||||| ||    
T  18637443 agaattgattttgagtgaattgattctaactaaaagtgagttgagagtacagtgatttgtgtttgga-------tagattctttttaaaattgagttgaa 18637351  T
Q  647 ctataaatgagtgtaaaattcaattctagaataaaaa 683  Q
    ||||||||| |||||||| ||||||||||||| ||||    
T  18637350 ctataaatgtgtgtaaaaatcaattctagaatcaaaa 18637314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 591 - 635
Target Start/End: Complemental strand, 8121657 - 8121613
Alignment:
Q  591 aggtaaagtgattggtgtttggaatttggatacattcatgtaaaa 635  Q
    |||||||||||||  |||||||| |||||||||||||||||||||    
T  8121657 aggtaaagtgatttatgtttggactttggatacattcatgtaaaa 8121613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 615 - 683
Target Start/End: Complemental strand, 38845543 - 38845473
Alignment:
Q  615 tttggatacattcatgtaaaaagtgagttaaactataaa--tgagtgtaaaattcaattctagaataaaaa 683  Q
    |||||||| |||||||||||||||||||| ||||||| |  || |||| ||| ||||||||||||| ||||    
T  38845543 tttggatatattcatgtaaaaagtgagtttaactatatatttgtgtgtgaaaatcaattctagaatcaaaa 38845473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 848742 - 848792
Alignment:
Q  69 aggaaagagtgctttggaaactcccagagaagtgcaatcagctggagttcc 119  Q
    ||||||||||| |||||||| ||| |||||||| |||||||| ||||||||    
T  848742 aggaaagagtgatttggaaattccgagagaagtacaatcagcgggagttcc 848792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 722
Target Start/End: Complemental strand, 9818758 - 9818717
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatca 722  Q
    ||||| || |||||| ||||||||||||||||||||||||||    
T  9818758 aaatcatagcttcaagtagaatcaattatggaggcaaaatca 9818717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 44141111 - 44141160
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 730  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  44141111 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 44141160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 563 - 730
Target Start/End: Complemental strand, 32928036 - 32927867
Alignment:
Q  563 aaattgattctgactaatagtgagttggaggtaaagtgattggtgtttggaatttggatacattcatgtaaaaagtgagttaaactataaat--gagtgt 660  Q
    ||||||||||| ||||| | ||||||| ||| ||||||||| |||||||||       ||||||||||||||| ||||||| ||||||||||  | ||||    
T  32928036 aaattgattcttactaaaattgagttgaaggcaaagtgatttgtgtttgga-------tacattcatgtaaaa-gtgagttgaactataaatttgtgtgt 32927945  T
Q  661 aaaattcaattctagaataaaaa--------tcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 730  Q
    |||| | ||||||| ||| ||||        ||||| |||||| ||||||||| ||| ||||||||||||||| ||||    
T  32927944 aaaaatgaattctataatcaaaagctacaaatcctagcttcaagtagaatcaactattgaggcaaaatcaattctact 32927867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 730
Target Start/End: Complemental strand, 37684429 - 37684380
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 730  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||| ||||    
T  37684429 aaatcctaacttcaagtagaatcaattctggagacaaaatcaattctact 37684380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 615 - 730
Target Start/End: Original strand, 32818356 - 32818480
Alignment:
Q  615 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgt--aaaattcaattctagaataaaaatc--------ctaacttcaaatagaatca 704  Q
    ||||||||||||||||||||| || |||| ||||||||||  ||||  |||| ||||||||||||| |||| |        ||| |||||||||||||||    
T  32818356 tttggatacattcatgtaaaa-gttagttgaactataaatttgtgtgcaaaaatcaattctagaatcaaaagctacaaattctagcttcaaatagaatca 32818454  T
Q  705 attatggaggcaaaatcaattatact 730  Q
    ||| ||||||||||||||||| ||||    
T  32818455 attctggaggcaaaatcaattctact 32818480  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 50061689 - 50061738
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 730  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||    
T  50061689 aaatcctaacttcaagtagaatcaattttggaggcaaaatcaattctact 50061738  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 677
Target Start/End: Complemental strand, 16552053 - 16551993
Alignment:
Q  616 ttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaa 677  Q
    |||||||||||||||||||| ||||||| ||||||||||  |||| ||| ||||||||||||    
T  16552053 ttggatacattcatgtaaaa-gtgagttgaactataaatttgtgtgaaaatcaattctagaa 16551993  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 730
Target Start/End: Original strand, 46344893 - 46344941
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaattatact 730  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||    
T  46344893 aaattctaacttcaagtagaat-aattatggaggcaaaatcaattatact 46344941  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 725
Target Start/End: Complemental strand, 25927332 - 25927288
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 725  Q
    ||||| ||||| |||||||||||||||||||||||| ||||||||    
T  25927332 aaatcttaactccaaatagaatcaattatggaggcataatcaatt 25927288  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 613
Target Start/End: Complemental strand, 33843854 - 33843805
Alignment:
Q  564 aattgattctgactaatagtgagttggaggtaaagtgattggtgtttgga 613  Q
    ||||||||||| |||| ||||||||||| |||||||||||  ||||||||    
T  33843854 aattgattctggctaaaagtgagttggatgtaaagtgatttatgtttgga 33843805  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 697 - 730
Target Start/End: Complemental strand, 38498271 - 38498238
Alignment:
Q  697 tagaatcaattatggaggcaaaatcaattatact 730  Q
    |||||||||||||||||||||||| |||||||||    
T  38498271 tagaatcaattatggaggcaaaataaattatact 38498238  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 560 - 597
Target Start/End: Complemental strand, 38716735 - 38716698
Alignment:
Q  560 agtaaattgattctgactaatagtgagttggaggtaaa 597  Q
    |||||||||||||||||||| ||||||||| |||||||    
T  38716735 agtaaattgattctgactaagagtgagttgcaggtaaa 38716698  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 660
Target Start/End: Complemental strand, 45694713 - 45694669
Alignment:
Q  615 tttggatacattcatgtaaaaagtgagttaaactataaatgagtgt 660  Q
    |||||||||||||||||||||| |||||| ||||||||||| ||||    
T  45694713 tttggatacattcatgtaaaaa-tgagttcaactataaatgtgtgt 45694669  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 725
Target Start/End: Original strand, 5724691 - 5724735
Alignment:
Q  681 aaatcctaacttcaaatagaatcaattatggaggcaaaatcaatt 725  Q
    |||||||| |||||| ||||||||||| |||||||||||||||||    
T  5724691 aaatcctagcttcaagtagaatcaattttggaggcaaaatcaatt 5724735  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 600 - 683
Target Start/End: Complemental strand, 947679 - 947597
Alignment:
Q  600 gattggtgtttggaatttggatacattcatgtaaaaagtgagttaaactataaatgagtgtaaaattcaattctagaataaaaa 683  Q
    |||| ||||||||| || |||||||||||||| ||||||||||| || ||||| || || ||| | ||||||||||||| ||||    
T  947679 gatttgtgtttggacttaggatacattcatgt-aaaagtgagttgaattataattgtgtttaagaatcaattctagaatcaaaa 947597  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 615 - 648
Target Start/End: Complemental strand, 35058157 - 35058124
Alignment:
Q  615 tttggatacattcatgtaaaaagtgagttaaact 648  Q
    ||||||||||||||||||||||||||||| ||||    
T  35058157 tttggatacattcatgtaaaaagtgagttgaact 35058124  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 678
Target Start/End: Original strand, 15928461 - 15928506
Alignment:
Q  633 aaaagtgagttaaactataaatgagtgtaaaattcaattctagaat 678  Q
    |||||||||||||||| |||||| |||||| | |||||||||||||    
T  15928461 aaaagtgagttaaactttaaatgtgtgtaagaatcaattctagaat 15928506  T

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