View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_20 (Length: 365)
Name: NF16112_high_20
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 350
Target Start/End: Original strand, 45744819 - 45745160
Alignment:
| Q |
9 |
agcagagaactggatccaggtcatattggtctcgtacacggtaaaaaacaaatattttatactaaaggagacaggaatagaagcatcaactgtattgttt |
108 |
Q |
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| T |
45744819 |
agcagagaactggatccaggtcatattggtctcgtacacggtaaaaaacaaatattttatactaaaggagacaggaatagaagcatcaactgtattgttt |
45744918 |
T |
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| Q |
109 |
atacagcaaagattgaaaaatccaagatttaaaatttccatgcagttttaaatactaaaagatgccaaacagatatatgaagtttcaaagctaaacaata |
208 |
Q |
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| T |
45744919 |
atacagcaaagattgaaaaatccaagatttaaaatttccatgcagttttaaatactaaaagatgccaaacagatatatgaagtttcaaagctaaacaata |
45745018 |
T |
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| Q |
209 |
taagccttgattcactaatctctaggagtactagaagtggacaatctaagtacagacaataagcatcttcccaactaaacaagtnnnnnnnctaccaaaa |
308 |
Q |
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| T |
45745019 |
taagccttgattcactaatctctaggagtactagaagtggacaatctaagtacagacaataagcatcttcccaactaaacaagtaaaaaaactaccaaaa |
45745118 |
T |
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| Q |
309 |
aactgatttctcgggcaaatgtcaaccttattctatttagat |
350 |
Q |
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| T |
45745119 |
aactgatttctcgggcaaatttcaaccttattctatttagat |
45745160 |
T |
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