View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_high_23 (Length: 356)

Name: NF16112_high_23
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_high_23
NF16112_high_23
[»] chr2 (6 HSPs)
chr2 (1-340)||(4326145-4326485)
chr2 (241-283)||(1494438-1494480)
chr2 (246-287)||(11063520-11063561)
chr2 (241-286)||(27237885-27237930)
chr2 (169-197)||(6772450-6772478)
chr2 (169-197)||(20952480-20952508)
[»] chr1 (12 HSPs)
chr1 (241-287)||(11639408-11639454)
chr1 (243-287)||(20713688-20713732)
chr1 (171-286)||(21002193-21002306)
chr1 (236-287)||(11695893-11695944)
chr1 (245-283)||(4622129-4622167)
chr1 (241-287)||(6292525-6292571)
chr1 (241-287)||(28689444-28689490)
chr1 (171-219)||(32958743-32958788)
chr1 (239-284)||(1565525-1565570)
chr1 (171-218)||(6292599-6292643)
chr1 (169-197)||(5886909-5886937)
chr1 (169-197)||(52542684-52542712)
[»] chr5 (7 HSPs)
chr5 (241-287)||(41957443-41957489)
chr5 (171-217)||(14331474-14331517)
chr5 (241-287)||(14331399-14331445)
chr5 (243-288)||(15308987-15309032)
chr5 (169-197)||(9174941-9174969)
chr5 (243-287)||(17258877-17258921)
chr5 (169-197)||(34736444-34736472)
[»] chr6 (5 HSPs)
chr6 (169-226)||(29249492-29249546)
chr6 (241-287)||(28641741-28641787)
chr6 (245-286)||(1575928-1575969)
chr6 (241-286)||(31624123-31624168)
chr6 (243-287)||(27894078-27894122)
[»] chr4 (2 HSPs)
chr4 (240-287)||(2901040-2901087)
chr4 (169-198)||(23582382-23582411)
[»] chr8 (3 HSPs)
chr8 (241-287)||(9835892-9835938)
chr8 (164-197)||(7714367-7714400)
chr8 (246-287)||(9700033-9700074)
[»] chr3 (4 HSPs)
chr3 (241-287)||(1217792-1217838)
chr3 (241-287)||(5391911-5391957)
chr3 (241-285)||(5166357-5166401)
chr3 (169-197)||(46407867-46407895)
[»] chr7 (4 HSPs)
chr7 (171-218)||(1418526-1418570)
chr7 (245-286)||(15740407-15740448)
chr7 (251-287)||(32443236-32443272)
chr7 (169-197)||(40371571-40371599)


Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 4326145 - 4326485
Alignment:
Q  1 tgaatcttttgcagtgatttgacttaattctgtgatggtgatgttggagtctttgttttagaatttcacaacttttggggtggagaatgccttggaatat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4326145 tgaatcttttgcagtgatttgacttaattctgtgatggtgatgttggagtctttgttttagaatttcacaacttttggggtggagaatgccttggaatat 4326244  T
Q  101 gcttttgatcaatgaccattataaacttatcctgaagctgtttgcattttctggtcactctctatggccatgtttggattgacttatttgagcttattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4326245 gcttttgatcaatgaccattataaacttatcctgaagctgtttgcattttctggtcactctctatggccatgtttggattgacttatttgagcttattat 4326344  T
Q  201 ctactgtcataagcacttgaaagactatttagaagtggagacagcttatgagatgtccataagctgtttttatcttattttcataagaaa-caatttata 299  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4326345 ctactgtcataagcacttgtaagactatttagaagtggagacagcttatgagatgtccataagctgtttttatcttattttcataagaaaccaatttata 4326444  T
Q  300 gcttatatgaagtcagttatatcaaaagcttatatgaaatc 340  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4326445 gcttatatgaagtcagttatatcaaaagcttatatgaaatc 4326485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 283
Target Start/End: Original strand, 1494438 - 1494480
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttca 283  Q
    ||||||||||| |||||||||| ||||||||| ||||||||||    
T  1494438 acagcttatgacatgtccataaactgtttttagcttattttca 1494480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 11063561 - 11063520
Alignment:
Q  246 ttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    |||||| ||||||||||| |||||||| ||||||||||||||    
T  11063561 ttatgacatgtccataagttgtttttagcttattttcataag 11063520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 27237885 - 27237930
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataa 286  Q
    ||||||||||| |||| ||||||||||||||| ||||||| |||||    
T  27237885 acagcttatgacatgtacataagctgtttttagcttatttccataa 27237930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 6772450 - 6772478
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  6772450 catgtttggattgacttatttgagcttat 6772478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 20952508 - 20952480
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  20952508 catgtttggattgacttatttgagcttat 20952480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 11639408 - 11639454
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  11639408 acagcttatgacatgtccataagctgtttttagcttattttcataag 11639454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 20713732 - 20713688
Alignment:
Q  243 agcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  20713732 agcttacgacatgtccataagctgtttttatcttattttcataag 20713688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 21002306 - 21002193
Alignment:
Q  171 tgtttggattgacttatttgagcttattatctactgtcataagcacttgaaagactatttagaag-tggagacagcttatgagatgtccataagctgttt 269  Q
    ||||||||||| |||||||||||||||   |||||  |||||| |||||  ||||| ||| |||| |||| || | |||||| |||||||||||||||||    
T  21002306 tgtttggattggcttatttgagcttat---ctacttgcataagaacttgtgagactgtttggaagatggaaactgtttatgacatgtccataagctgttt 21002210  T
Q  270 ttatcttattttcataa 286  Q
    | |  ||||||||||||    
T  21002209 tcaatttattttcataa 21002193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 11695944 - 11695893
Alignment:
Q  236 tggagacagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    |||| |||| |||||| |||||||||||||||||| | ||||||||||||||    
T  11695944 tggaaacagtttatgacatgtccataagctgttttcaacttattttcataag 11695893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 4622167 - 4622129
Alignment:
Q  245 cttatgagatgtccataagctgtttttatcttattttca 283  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  4622167 cttatgacatgtccataagctgtttttagcttattttca 4622129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 6292571 - 6292525
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| |||| ||||||||||||| | ||||||||||||||    
T  6292571 acagcttatgacatgttcataagctgttttcagcttattttcataag 6292525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 28689444 - 28689490
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| ||||||||||| |||||| | ||||||||||||||    
T  28689444 acagcttatgacatgtccataagttgttttcagcttattttcataag 28689490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 32958788 - 32958743
Alignment:
Q  171 tgtttggattgacttatttgagcttattatctactgtcataagcacttg 219  Q
    ||||| |||||||||||||||||||||   |||||||||||||||||||    
T  32958788 tgtttagattgacttatttgagcttat---ctactgtcataagcacttg 32958743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 1565525 - 1565570
Alignment:
Q  239 agacagcttatgagatgtccataagctgtttttatcttattttcat 284  Q
    ||||||||||||| |||| ||||||||||||| | |||||||||||    
T  1565525 agacagcttatgacatgtgcataagctgttttcagcttattttcat 1565570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 6292643 - 6292599
Alignment:
Q  171 tgtttggattgacttatttgagcttattatctactgtcataagcactt 218  Q
    |||||||||||||||||||||||   |||||||||| |||||||||||    
T  6292643 tgtttggattgacttatttgagc---ttatctactgacataagcactt 6292599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 5886909 - 5886937
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  5886909 catgtttggattgacttatttgagcttat 5886937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 52542712 - 52542684
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  52542712 catgtttggattgacttatttgagcttat 52542684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 41957443 - 41957489
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||||    
T  41957443 acagcttatgacatgtccataagttgttttcatcttattttcataag 41957489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 14331517 - 14331474
Alignment:
Q  171 tgtttggattgacttatttgagcttattatctactgtcataagcact 217  Q
    |||||||||||||||||||||||   |||||||||||||||||||||    
T  14331517 tgtttggattgacttatttgagc---ttatctactgtcataagcact 14331474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 14331445 - 14331399
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| |||||||||||||| ||| | ||||||||||||||    
T  14331445 acagcttatgacatgtccataagctgatttcagcttattttcataag 14331399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 15308987 - 15309032
Alignment:
Q  243 agcttatgagatgtccataagctgtttttatcttattttcataaga 288  Q
    ||||||||| |||| ||||| ||||||| |||||||||||||||||    
T  15308987 agcttatgatatgttcataacctgttttcatcttattttcataaga 15309032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 9174969 - 9174941
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  9174969 catgtttggattgacttatttgagcttat 9174941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 17258877 - 17258921
Alignment:
Q  243 agcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||| |||| ||||||||||||| | ||||||||||||||    
T  17258877 agcttatgacatgttcataagctgttttcagcttattttcataag 17258921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 34736444 - 34736472
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  34736444 catgtttggattgacttatttgagcttat 34736472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 29249546 - 29249492
Alignment:
Q  169 catgtttggattgacttatttgagcttattatctactgtcataagcacttgaaagact 226  Q
    ||||||||||||||||||||||||||||||   |||||| ||||| ||||| ||||||    
T  29249546 catgtttggattgacttatttgagcttatt---tactgttataagtacttgtaagact 29249492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 28641741 - 28641787
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||| | |||| ||||||||||||||| ||||||||||||||    
T  28641741 acagcttataacatgttcataagctgtttttagcttattttcataag 28641787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 1575969 - 1575928
Alignment:
Q  245 cttatgagatgtccataagctgtttttatcttattttcataa 286  Q
    ||||||| |||| ||||||||||||||| |||||||||||||    
T  1575969 cttatgacatgttcataagctgtttttaacttattttcataa 1575928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Complemental strand, 31624168 - 31624123
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataa 286  Q
    ||||||||||| |||| ||||||||||||| | |||||||||||||    
T  31624168 acagcttatgacatgttcataagctgttttcaacttattttcataa 31624123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 27894122 - 27894078
Alignment:
Q  243 agcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||| |||||||||| ||||||| | ||||||||||||||    
T  27894122 agcttatgatatgtccataaactgttttcagcttattttcataag 27894078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 2901087 - 2901040
Alignment:
Q  240 gacagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    |||||||||||| ||||||||||| | |||||||||||||| ||||||    
T  2901087 gacagcttatgacatgtccataagttatttttatcttatttacataag 2901040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 198
Target Start/End: Original strand, 23582382 - 23582411
Alignment:
Q  169 catgtttggattgacttatttgagcttatt 198  Q
    ||||||||||||||||||||||||||||||    
T  23582382 catgtttggattgacttatttgagcttatt 23582411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 9835892 - 9835938
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| |||| ||||||||||||| ||||||||| ||||||    
T  9835892 acagcttatgacatgttcataagctgttttcatcttatttccataag 9835938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 7714400 - 7714367
Alignment:
Q  164 atggccatgtttggattgacttatttgagcttat 197  Q
    |||| |||||||||||||||||||||||||||||    
T  7714400 atgggcatgtttggattgacttatttgagcttat 7714367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 9700074 - 9700033
Alignment:
Q  246 ttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    |||||| |||||||||||||||||| | ||||||||||||||    
T  9700074 ttatgacatgtccataagctgttttcaccttattttcataag 9700033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 1217792 - 1217838
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| ||||||||||| |||||| |||||| |||||||||    
T  1217792 acagcttatgacatgtccataagttgttttcatcttactttcataag 1217838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 5391957 - 5391911
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcataag 287  Q
    ||||||||||| |||| ||||||||||||| | ||||||||||||||    
T  5391957 acagcttatgacatgttcataagctgttttcaacttattttcataag 5391911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 5166401 - 5166357
Alignment:
Q  241 acagcttatgagatgtccataagctgtttttatcttattttcata 285  Q
    ||||| ||||| |||| ||||||||||||| ||||||||||||||    
T  5166401 acagcatatgacatgttcataagctgttttcatcttattttcata 5166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 46407895 - 46407867
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  46407895 catgtttggattgacttatttgagcttat 46407867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 1418570 - 1418526
Alignment:
Q  171 tgtttggattgacttatttgagcttattatctactgtcataagcactt 218  Q
    |||||||||||||||||||||||   |||||||||| |||||||||||    
T  1418570 tgtttggattgacttatttgagc---ttatctactggcataagcactt 1418526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 15740407 - 15740448
Alignment:
Q  245 cttatgagatgtccataagctgtttttatcttattttcataa 286  Q
    ||||||| |||| ||||||||||||||| |||||||||||||    
T  15740407 cttatgacatgttcataagctgtttttaacttattttcataa 15740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 287
Target Start/End: Complemental strand, 32443272 - 32443236
Alignment:
Q  251 agatgtccataagctgtttttatcttattttcataag 287  Q
    |||||||||||||||||||| | ||||||||||||||    
T  32443272 agatgtccataagctgttttcaacttattttcataag 32443236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 40371571 - 40371599
Alignment:
Q  169 catgtttggattgacttatttgagcttat 197  Q
    |||||||||||||||||||||||||||||    
T  40371571 catgtttggattgacttatttgagcttat 40371599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University