View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_28 (Length: 347)
Name: NF16112_high_28
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 7990417 - 7990092
Alignment:
| Q |
1 |
ttgaaaaatctaaagaagaaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaa-gagatatgataacaaagatttc |
99 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7990417 |
ttgaaaaatctaaagaagtaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaaagagatatgataacaaagatttc |
7990318 |
T |
|
| Q |
100 |
attatagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaattacaaccagcaagcagaaaccatatagattttc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7990317 |
attatagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaattacaaccagcaagcagaaaccatatagattttc |
7990218 |
T |
|
| Q |
200 |
tgcaacttgagttaccccgacaaaattgcaatttaaaatcggatatggatccactgcagtcagaaaagtatgcatgcagtcactacaatacaacttctaa |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
7990217 |
tgcaacttgagttaccccgacaaaattgcaatttaaaatcggatatggatccactgcagtcggaaaagta----tgcagtcactacaatacaacttctaa |
7990122 |
T |
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| Q |
300 |
atttatcactagatagatattagttcatac |
329 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
7990121 |
atttatcactagatagatattagttcatac |
7990092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 40616223 - 40616386
Alignment:
| Q |
4 |
aaaaatctaaagaagaaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaagagatatgataacaaagatttcatta |
103 |
Q |
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||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| |
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| T |
40616223 |
aaaaatctaaagaagtaagaatgtataaatgcaaaggatatttaagtatttgacttaaaattataaacacttaagagatatgataacaaagacttcatta |
40616322 |
T |
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| Q |
104 |
tagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaatt |
167 |
Q |
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| T |
40616323 |
tagcactcccacatcatagacgatatcatagattaagataattcctacaacatgatttcaaatt |
40616386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 210 - 271
Target Start/End: Original strand, 40616391 - 40616452
Alignment:
| Q |
210 |
gttaccccgacaaaattgcaatttaaaatcggatatggatccactgcagtcagaaaagtatg |
271 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |
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| T |
40616391 |
gttaccccgacaaaattgcaatttaaaatcgaatatggatccactgtagtcgaaaaagtatg |
40616452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 5032237 - 5032063
Alignment:
| Q |
1 |
ttgaaaaatctaaagaagaaagaatgtaaatatgcaaaggatattcaagtatttgacttaaaattttaagcacttaagagatatgataacaaagatttca |
100 |
Q |
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|||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| |
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| T |
5032237 |
ttgaaaaatctaaagaagcatgaatgtaaaaatgcaaaggatattcaagtatttgacttaaaattttaagcacttaagggatatgatgacaaagacttca |
5032138 |
T |
|
| Q |
101 |
ttatagcactcccacatcatagatgatatcatagattaagataattcctacaacatgatttcaaattacaaccag |
175 |
Q |
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| ||| |||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
5032137 |
tcataacactcccacatcatggataatatcatagattaagataatttctacaacatgattttaaattacaaccag |
5032063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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