View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_29 (Length: 347)
Name: NF16112_high_29
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 7 - 314
Target Start/End: Original strand, 47183341 - 47183648
Alignment:
| Q |
7 |
ataggagaagataacattggatctaacaagtgattatttttatctatccacgcaaggatttgaaatctaatttggttttgaccttttatctcttccgtca |
106 |
Q |
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| T |
47183341 |
ataggagaagataacattggatctaacaagtgattatttttatctatccacgcaaggatttgaaatctaatttggttttgaccttttatctcttccgtca |
47183440 |
T |
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| Q |
107 |
ttggtggagttcctatatatagatgttagatgtatatatatacactgctaagttaacgtgagaagttatcagaaatctttcatcaaaatctttctctgat |
206 |
Q |
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| T |
47183441 |
ttgggggagttcctatatatagatgttagatgtatatatatacactgctaagttaacgtgagaagttatcagaaatctttcatcaaaatctttctctgat |
47183540 |
T |
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| Q |
207 |
cttacattcattatttccaatttcattcaatctcttggttgcaaggttatccttcaaccttgaggtattgttcgatacttaaagatcaatctggccacat |
306 |
Q |
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| T |
47183541 |
cttacattcattatttccaatttcattcaatctcttggttgcaaggttatccttcaaccttgaggtattgttcgatacttaaagatcaatctggccacat |
47183640 |
T |
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| Q |
307 |
tcattcat |
314 |
Q |
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|||||||| |
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| T |
47183641 |
tcattcat |
47183648 |
T |
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