View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_31 (Length: 329)
Name: NF16112_high_31
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36359680 - 36359358
Alignment:
| Q |
1 |
caacaatttagtccgtttagtcaaatctcaatcgttaaatttaaattgaacattggtttaacgactatgatttgactattcagattaaattgttacggat |
100 |
Q |
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| T |
36359680 |
caacaatttaatatgtttagtcaaatctcaatcgttaaatttaaattgaacattggtttaacgactatgagttgactattcagattaaattgttacggat |
36359581 |
T |
|
| Q |
101 |
tttataatcaaggattttaattggatatacttgttaattaactaactttatttttataggctctaacatttgatagttgcaaggacttaatagttgagga |
200 |
Q |
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| T |
36359580 |
ttcataatcaaggattttaattggatatacttgttaattaactaaatttatttttgtaggctctaacatttgatagttgcaaggacttaatagttgagga |
36359481 |
T |
|
| Q |
201 |
tttgacaatacaaaatgcacaacaaatccacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaatagtcct |
300 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36359480 |
tttgacaatacaaaatgcgcaacaaattcacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatcaccagggaatagtcct |
36359381 |
T |
|
| Q |
301 |
aacaccgacggaattcatctcac |
323 |
Q |
| |
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|||||||||||||||||| |||| |
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| T |
36359380 |
aacaccgacggaattcatatcac |
36359358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 3 - 323
Target Start/End: Complemental strand, 36348416 - 36348078
Alignment:
| Q |
3 |
acaatttagtccgtttagtcaaatctcaatcgttaaatttaaattgaacattggtttaacgactatgatttgactattcagattaaattgtt------ac |
96 |
Q |
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|||||||||||| ||||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||||| ||| ||| ||||||| || |
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| T |
36348416 |
acaatttagtccatttagtcaaatctcagtcgttgaatttaaattgaacattgatttaataactatgatttgactgttccaattgaattgtttagaatac |
36348317 |
T |
|
| Q |
97 |
gga--------ttttataatcaaggattttaattggat----atacttgttaattaactaactttatttttataggctctaacatttgatagttgcaagg |
184 |
Q |
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|| ||| |||||||| ||| |||||||||| |||| |||||||||||||||||| ||||| |||||||| || |||| || |||| ||| |
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| T |
36348316 |
gggcttacaactttcataatcaaagatattaattggattgaaatacgtgttaattaactaactttgtttttgtaggctctgacgtttgctaattgcgagg |
36348217 |
T |
|
| Q |
185 |
acttaatagttgaggatttgacaatacaaaatgcacaacaaatccacgtttcattccaggattcgactaatgttaaagcttctggtctcaaagtgtcatc |
284 |
Q |
| |
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|||| ||||||||| |||||| |||| |||||| ||||||||||| ||||||| |||||||| |||||||| |||||||||||| | ||| |||| |
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| T |
36348216 |
acttgatagttgagaatttgaagatacgaaatgcgcaacaaatccatatttcatttcaggattcagttaatgttacagcttctggtctgattgtggcatc |
36348117 |
T |
|
| Q |
285 |
accagggaatagtcctaacaccgacggaattcatctcac |
323 |
Q |
| |
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||| | | |||||||||||||||| ||||||||| |||| |
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|
| T |
36348116 |
accggaggatagtcctaacaccgatggaattcatgtcac |
36348078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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