View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_33 (Length: 316)
Name: NF16112_high_33
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 316
Target Start/End: Original strand, 33320970 - 33321272
Alignment:
| Q |
14 |
aggaaaagagagcattagccacctagctgtggtggctcaaaagaatctcagtaaaagcaagaaaaacttggattgaaaagtgtttctccatttgcattta |
113 |
Q |
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| T |
33320970 |
aggaaaagagagcattagccacctagctgtggtggctcaaaagaatctcagtaaaagcaagaaaaacttgtattgaaaagtgtttctccatttgcattta |
33321069 |
T |
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| Q |
114 |
ccagaatataaaacaaacaggtaaattttggaagattttccaactcgtttcatgtgtgtatgtaattccctaaagaagaaaaatttgagtaccttccaaa |
213 |
Q |
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| T |
33321070 |
ccagaatataaaacaaacaggttaattttggaagattttccaactcgtttcatgtgtgtatgtaattccctaaagatgaagaatttgagtaccttccaaa |
33321169 |
T |
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| Q |
214 |
atgccacaactaaacatatcatttaataccaatcaagttgagaaaaagaacgtgcctgcaactctacaagtggtgggtcgtccaataaaataatccagct |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33321170 |
atgccacaactaaacatatcatttaataccaatcaagttgagaaaaagaacgtgcctgcaactctacaagtggtgggtcgtccaataaaataatccagct |
33321269 |
T |
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| Q |
314 |
agt |
316 |
Q |
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||| |
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| T |
33321270 |
agt |
33321272 |
T |
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