View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_high_34 (Length: 305)
Name: NF16112_high_34
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 25089558 - 25089820
Alignment:
| Q |
21 |
tcagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggt |
120 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
25089558 |
tcagccacgccgtgtggactccaaaatatggcaaatacgcgctggacctgctgtcaagattccgaagattggctcaaaagtctactacttctcagaaggc |
25089657 |
T |
|
| Q |
121 |
cacttggaacatgctagtccatcccctaacattgaaacacagctccaatctatgtcttcgccttccatccgttctatgtatcatctcatctattgatctt |
220 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||| |||||||||||| || |||||||||||| |||||||| |
|
|
| T |
25089658 |
cacttggaacatgcttgttcatcccctaacattgaaacagagctcc-ttctatgtcttcgccctccatccgttctctgcatcatctcatctgttgatctt |
25089756 |
T |
|
| Q |
221 |
ctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaacaactgatg |
284 |
Q |
| |
|
||||| ||| ||||||||||||||| || || ||||||||||| ||||||||||||||||||| |
|
|
| T |
25089757 |
ctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaacaactgatg |
25089820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 284
Target Start/End: Original strand, 25147528 - 25147790
Alignment:
| Q |
21 |
tcagccacgccgtatgaaatccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggt |
120 |
Q |
| |
|
||||||||||||| || | |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
|
|
| T |
25147528 |
tcagccacgccgtgtggactccaaaatatggcaaatacgcgctggacctgctgtcaagattccgaagattggctcaaaagtctactacttctcagaaggc |
25147627 |
T |
|
| Q |
121 |
cacttggaacatgctagtccatcccctaacattgaaacacagctccaatctatgtcttcgccttccatccgttctatgtatcatctcatctattgatctt |
220 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||||| |||||||||||||| |||||||||||| || |||||||||||| |||||||| |
|
|
| T |
25147628 |
cacttggaacatgcttgttcatcccctaacattgaaacagagctcc-ttctatgtcttcgccctccatccgttctctgcatcatctcatctgttgatctt |
25147726 |
T |
|
| Q |
221 |
ctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaacaactgatg |
284 |
Q |
| |
|
||||| ||| ||||||||||||||| || || ||||||||||| ||||||||||||||||||| |
|
|
| T |
25147727 |
ctggcaaatcttcacaccgatgaagtctttgcgaaactgctccttactccggtaacaactgatg |
25147790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 41 - 134
Target Start/End: Complemental strand, 25728466 - 25728373
Alignment:
| Q |
41 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
134 |
Q |
| |
|
||||||||||||| ||||||||||| || | ||||||||||| |||||| ||| ||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
25728466 |
ccaaaatatggcagatatgcgccggccccgacgtcaagattccaaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25728373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 25224782 - 25224875
Alignment:
| Q |
41 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
134 |
Q |
| |
|
||||||||||||| ||||||| || || | |||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
25224782 |
ccaaaatatggcagatatgcgttggccccgacgtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25224875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 41 - 134
Target Start/End: Original strand, 25288938 - 25289031
Alignment:
| Q |
41 |
ccaaaatatggcaaatatgcgccggacctgctgtcaagattccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgc |
134 |
Q |
| |
|
||||||||||||| ||||||| || || | |||||||||||||||||| ||| ||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
25288938 |
ccaaaatatggcagatatgcgttggccccgacgtcaagattccgaagattcactctaaagtttactacttcccacgaggtcatctggaacatgc |
25289031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 275
Target Start/End: Complemental strand, 26099296 - 26099248
Alignment:
| Q |
227 |
gatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaa |
275 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||||||||||| |||| |
|
|
| T |
26099296 |
gatcctcacacagatgaagtctttgccaaactgctcctcactcccgtaa |
26099248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 213 - 276
Target Start/End: Complemental strand, 25443754 - 25443691
Alignment:
| Q |
213 |
ttgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaac |
276 |
Q |
| |
|
||||||| || || ||||||||||||||||| || ||||||||| |||| |||| ||||||||| |
|
|
| T |
25443754 |
ttgatctcctagctgatcctcacaccgatgaggtcttcgccaaattgctactcagtccggtaac |
25443691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 277
Target Start/End: Original strand, 25618083 - 25618133
Alignment:
| Q |
227 |
gatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaaca |
277 |
Q |
| |
|
|||||| |||| |||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
25618083 |
gatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaaca |
25618133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 25617936 - 25617992
Alignment:
| Q |
79 |
attccgaagattggctcaaaagtctactacttcccacaaggtcacttggaacatgct |
135 |
Q |
| |
|
||||||||| || ||| |||||||||||||| ||| |||||||||| ||||||||| |
|
|
| T |
25617936 |
attccgaagcttcactctaaagtctactactttccaaaaggtcacttagaacatgct |
25617992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 560760 - 560839
Alignment:
| Q |
197 |
tgtatcatctcatctattgatcttctggcggatcctcacaccgatgaagttttcgccaaactgctcctcactccggtaac |
276 |
Q |
| |
|
||||||||||| || ||||||| || || ||||||||||| ||||| || ||||| |||||||| |||||||| ||||| |
|
|
| T |
560760 |
tgtatcatctccgctgttgatctcctcgccgatcctcacactgatgaggtcttcgctaaactgctgctcactcctgtaac |
560839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University