View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_high_35 (Length: 303)
Name: NF16112_high_35
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 10 - 288
Target Start/End: Original strand, 4315120 - 4315398
Alignment:
| Q |
10 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4315120 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagctagagaag |
4315219 |
T |
|
| Q |
110 |
tagttaacagcggtgctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
4315220 |
tagttaacagcggtgctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctttgagat |
4315319 |
T |
|
| Q |
210 |
catcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaag |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4315320 |
catcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaag |
4315398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 288
Target Start/End: Original strand, 4306261 - 4306536
Alignment:
| Q |
13 |
aatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgagagaagtag |
112 |
Q |
| |
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|||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
4306261 |
aatatctttgaatttgagaatgtattcaagtctagcaactatatctaccaactcacaaaccatatctctttcttcaaagttgaaaaagcgagagaagtag |
4306360 |
T |
|
| Q |
113 |
ttaacagcggtgctcacctgcttgtt---cttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagat |
209 |
Q |
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|||||| | ||||||| ||||| |||| | | |||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |
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| T |
4306361 |
ttaacaaca---ctcacctctttgttttccttcccaattgcagctttggtagagatgtggtcgagaagatcatcagtaaaataaacagcatctttgagat |
4306457 |
T |
|
| Q |
210 |
catcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaag |
288 |
Q |
| |
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|||||||||||||| |||||||||||||||||| |||||||||||||| ||| || | ||||||||||||||||||||| |
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| T |
4306458 |
catcaagccatttgataacagcagagtctttgagctgtttctgttcagcatcgttcaacacagcttcaacagcataaag |
4306536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 29 - 288
Target Start/End: Original strand, 4309158 - 4309414
Alignment:
| Q |
29 |
agaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgagagaagtagttaacagcggtgctca |
128 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||| |||||||||||| ||||||||| |||||||| |||||||||||||| || | |||| |
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| T |
4309158 |
agaatgtattcaagtctagcaactatgtcttccaacttataaaccatatccctttcttcaaaattgaaaaatggagagaagtagttagtag---tactca |
4309254 |
T |
|
| Q |
129 |
cctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagatcatcaagccatttgttaac |
228 |
Q |
| |
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||| |||||||||| ||||||||||||||||| |||||||||||| ||| |||||||||| ||| ||||| ||| |||||||||| |||||||| |||| |
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| T |
4309255 |
cctccttgttcttccgagtagcagctttggtacaaatgtggtcgaaaaggtcatcagcaacatagacagcgtctttgagatcatcgagccatttcttaat |
4309354 |
T |
|
| Q |
229 |
agcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaag |
288 |
Q |
| |
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|||||||||||||||||||||||| || |||||| ||||||||||| ||||||||||| |
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|
| T |
4309355 |
agcagagtctttgaactgtttctgctccacatcattcagcacagcttccacagcataaag |
4309414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 4253377 - 4253102
Alignment:
| Q |
10 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| |||||||| ||| |||| |||||||||||||||||||||||| || |
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|
| T |
4253377 |
aagaatatctttgaatttgagaatggattcaagtttagcaactatattttccagcttacaaagcatgtccctttcttcaaagttgaaaaagcgagataaa |
4253278 |
T |
|
| Q |
110 |
tagttaacagcggtgctcacctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatgagat |
209 |
Q |
| |
|
|| || ||| || |||||||||||||| ||||| |||||||||||||| ||||||| ||| ||||| |||||||| | ||| ||| || || |||||| |
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| T |
4253277 |
taatt---agcagtactcacctgcttgtttttctgtgtagcagctttggttgaaatgttgtcaagaaggtcatcagctacatagacaacacctttgagat |
4253181 |
T |
|
| Q |
210 |
catcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaag |
288 |
Q |
| |
|
|||| | |||| |||||| ||||| || |||||||||||| || || | ||| |||| ||||||||| ||||||||||| |
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| T |
4253180 |
catcgatccatctgttaatagcagggtttttgaactgtttttgctccgcatcgttaaacacagcttccacagcataaag |
4253102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 278
Target Start/End: Complemental strand, 4246263 - 4245988
Alignment:
| Q |
10 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatat----cttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgaga |
105 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||| |
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|
| T |
4246263 |
aagaatatctttgaatttgagaatgtattcaagcctagcaactatatatatcttccaacttaaaaaccatatccctatcttcaaagttgaaaaagcgaga |
4246164 |
T |
|
| Q |
106 |
gaagtagttaacagcggtgctcac------ctgcttgttcttctgagtagcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagca |
199 |
Q |
| |
|
||||||||| || | ||||| || ||||||||| | ||| | |||| ||||| || || |||||||| || ||||| | ||| |||| |
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|
| T |
4246163 |
gaagtagtt---agtactactcacatgcttctccttgttcttggaaatagaaactttagtagagatatgatcgagaaggtcgtcagctatatagggagca |
4246067 |
T |
|
| Q |
200 |
tctatgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaa |
278 |
Q |
| |
|
||| |||| ||||||| | | |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||| |
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|
| T |
4246066 |
tctttgaggtcatcaaactagttgttaacagcagagtctttgagttgtttctgttcagcatcattaaggacagcttcaa |
4245988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 41932809 - 41932522
Alignment:
| Q |
10 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||| | |||| |||||||||||||| |||||| | |||||||||||||||||||||||||||| |
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|
| T |
41932809 |
aagaatatctttgaatttgagaatggattcaagtctagcggcgatattttccaacttacaaaacatatctctttcttcaaagttgaaaaagcgagagaag |
41932710 |
T |
|
| Q |
110 |
tagttaacagcggtgctcacctgctt------gttcttctgagtag------cagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacag |
197 |
Q |
| |
|
||||||| || | ||||||||||| ||||||| || || ||||||| ||||| ||||| || | || |||||||||| ||| |||| |
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|
| T |
41932709 |
tagttaagag---tactcacctgcttctccttgttcttccaagaagtagcagcagctttagtagagatgtgatccaaaatgtcatcagcaacatagacag |
41932613 |
T |
|
| Q |
198 |
catctatgagatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcataaag |
288 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||| |
|
|
| T |
41932612 |
catctttgagatcatcgagccatttgttaacagcagagtctttgaactgtttctgttcagcatcattcaagacagcttcaacagcataaag |
41932522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 34803146 - 34803411
Alignment:
| Q |
10 |
aagaatatctttgaacttgagaatgtattcaagtttagcaactatatcttccaacttacaaaccatatcccgttcttcaaagttgaaaaagcgagagaag |
109 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||| | |||| | ||| |||||| |||||||||||| ||||||||||||||||| |||| ||||| |
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|
| T |
34803146 |
aagaatatctttgaattttagaatgtattcaagtctagaagctatgttttctaacttaaaaaccatatccctttcttcaaagttgaaaaggcgatagaag |
34803245 |
T |
|
| Q |
110 |
tagttaacagcggtgctcacctgcttgttcttctgagta---gcagctttggtagaaatgtggtcgagaagatcatcagcaaaataaacagcatctatga |
206 |
Q |
| |
|
|| ||||||| ||| |||||| ||||| || ||||| ||||||||||| || | ||| |||||||| | ||||||||| ||| ||| |
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|
| T |
34803246 |
ta-------------ctcacctcctttttcttccgagtagttgcggctttagtagaaatgtgatccaaaaggtcatcagctacataaacagcgtctttga |
34803332 |
T |
|
| Q |
207 |
gatcatcaagccatttgttaacagcagagtctttgaactgtttctgttcagtatcattaagcacagcttcaacagcata |
285 |
Q |
| |
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| ||||| ||||| |||||||||||||||||||||| |||||||| ||| | ||||| ||| |||||||| || ||||| |
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|
| T |
34803333 |
ggtcatcgagccagttgttaacagcagagtctttgatctgtttctattccgcatcataaagaacagcttctactgcata |
34803411 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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