View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_high_39 (Length: 299)

Name: NF16112_high_39
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_high_39
NF16112_high_39
[»] chr4 (2 HSPs)
chr4 (1-64)||(8557927-8557990)
chr4 (167-223)||(41805162-41805219)
[»] chr7 (2 HSPs)
chr7 (1-64)||(22488419-22488482)
chr7 (172-235)||(12142067-12142130)
[»] chr2 (3 HSPs)
chr2 (159-244)||(2758465-2758551)
chr2 (167-245)||(16411957-16412035)
chr2 (150-242)||(38356833-38356926)
[»] chr3 (2 HSPs)
chr3 (1-50)||(33508196-33508245)
chr3 (146-211)||(51291714-51291780)
[»] chr5 (2 HSPs)
chr5 (159-199)||(6237654-6237695)
chr5 (159-223)||(34597649-34597714)
[»] chr8 (1 HSPs)
chr8 (183-223)||(6406866-6406906)


Alignment Details
Target: chr4 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8557990 - 8557927
Alignment:
Q  1 ttgccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagca 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8557990 ttgccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagca 8557927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 41805219 - 41805162
Alignment:
Q  167 tgtctattgtaaaattagagg-ggtgtttgtgtcatttagagagaccttaggggaggt 223  Q
    |||||||| ||||| |||||| ||||||||||| ||||| ||||||||| ||||||||    
T  41805219 tgtctattataaaactagaggaggtgtttgtgttatttaaagagaccttgggggaggt 41805162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22488482 - 22488419
Alignment:
Q  1 ttgccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagtcgtgttgtatagca 64  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22488482 ttgccttccgcatgatttgtgtgttgtgtattgtcgtggggataaagagtcgtgttgtatagca 22488419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 12142067 - 12142130
Alignment:
Q  172 attgtaaaattagaggggtgtttgtgtcatttagagagaccttaggggaggtgagtgtattttt 235  Q
    ||||||||| |||||||||||  | |||||||| |||||||| | ||||| |||||||||||||    
T  12142067 attgtaaaaatagaggggtgtcggcgtcatttaaagagacctcaagggagatgagtgtattttt 12142130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 2758465 - 2758551
Alignment:
Q  159 gaggttagtgtctattgtaaaattagagggg-tgtttgtgtcatttagagagaccttaggggaggtgagtgtattttttcctaaatt 244  Q
    ||||||||||| || | |||||||||||||| |||| |||| |||||   |||||||| |||||||||||||| |||||||||||||    
T  2758465 gaggttagtgtttagtttaaaattagaggggatgttagtgttatttaagaagaccttaagggaggtgagtgtaatttttcctaaatt 2758551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 245
Target Start/End: Original strand, 16411957 - 16412035
Alignment:
Q  167 tgtctattgtaaaattagaggggtgtttgtgtcatttagagagaccttaggggaggtgagtgtattttttcctaaatta 245  Q
    |||||||||||||| ||||||  ||| ||||||||||| ||| || | ||||||||| ||||||| ||||| |||||||    
T  16411957 tgtctattgtaaaaatagaggaatgtctgtgtcatttaaagaaacttcaggggaggtaagtgtatcttttcttaaatta 16412035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 38356926 - 38356833
Alignment:
Q  150 aactcaagcgaggttagtgtctattgtaaaattagagggg-tgtttgtgtcatttagagagaccttaggggaggtgagtgtattttttcctaaa 242  Q
    |||| ||| ||||||| ||| | || ||||| |||||||| |||||||||||| |  | |||||| |||||||||||||||| |||| ||||||    
T  38356926 aacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtgtaattttccctaaa 38356833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 33508245 - 33508196
Alignment:
Q  1 ttgccttccgcatgatttgtgtgtcgtgtattgtcgtggggataaagagt 50  Q
    ||||| |||||||||||||||||| ||||||||||||| || ||||||||    
T  33508245 ttgccatccgcatgatttgtgtgtggtgtattgtcgtgagggtaaagagt 33508196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Complemental strand, 51291780 - 51291714
Alignment:
Q  146 atagaactcaagcgaggttagtgtctattgtaaaattaga-ggggtgtttgtgtcatttagagagac 211  Q
    |||||||| | | ||||||| |||||||| |||||||||| |||||||||||| |||||| ||||||    
T  51291780 atagaacttaggggaggttaatgtctattttaaaattagagggggtgtttgtgccatttaaagagac 51291714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 6237654 - 6237695
Alignment:
Q  159 gaggttagtgtctattgtaaaattagagggg-tgtttgtgtc 199  Q
    |||||||||||||||| |||||||||||||| ||||||||||    
T  6237654 gaggttagtgtctattttaaaattagaggggatgtttgtgtc 6237695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 34597649 - 34597714
Alignment:
Q  159 gaggttagtgtctattgtaaaattagagggg-tgtttgtgtcatttagagagaccttaggggaggt 223  Q
    |||| |||||| |||| |||||||||||||| ||||||||| |||||  ||||||| |||||||||    
T  34597649 gaggctagtgtttattttaaaattagaggggatgtttgtgttatttaaggagacctcaggggaggt 34597714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 6406906 - 6406866
Alignment:
Q  183 agaggggtgtttgtgtcatttagagagaccttaggggaggt 223  Q
    |||||||||||||| |||||||  |||||||||||||||||    
T  6406906 agaggggtgtttgtatcatttaatgagaccttaggggaggt 6406866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University