View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_high_40 (Length: 296)
Name: NF16112_high_40
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_40 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 42213578 - 42213289
Alignment:
| Q |
16 |
cttgttactaaacacaaccagaaagccaaccagatgttcgcaccagaatcgaatgaagcagaatagtcattctcttcaacaaacggcgaagactttcttc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42213578 |
cttgttactaaacacaaccagaaagccaaccagatgttcgcaccagaattgaatgaagcagaatagtcattctcttcaacaaacggcgaagactttcttc |
42213479 |
T |
|
| Q |
116 |
tgttaccacgg---------cattcacgaagatcagtgtttctctttgatgatgatacttgagtgcaaataaaagctacttgctttctcatattacaaag |
206 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42213478 |
tgttaccacggtcaccacggcattcacgaagatcagtgtttctctttgatgatgatacttgagtgcaaataaaagctacttgctttctcatattacaaag |
42213379 |
T |
|
| Q |
207 |
gtgagcagtttgtttttgctcttctgtcatgctgccaatttcacttcctgttaaactcattccagtagctatcatcctaaataaggatca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42213378 |
gtgagcagtttgtttttgctcttctgtcatgctgccagtttcacttcctgttaaactcattccagtagctatcatcctaaataaggatca |
42213289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 42206745 - 42206640
Alignment:
| Q |
16 |
cttgttactaaacacaaccagaaagccaaccagatgttcgcaccagaatcgaatgaagcagaatagtcattctcttcaacaaacggcgaagactttcttc |
115 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||| |||| ||| | ||| |||||||||||||||||| |||||||||||||||| ||||||| ||||| |
|
|
| T |
42206745 |
cttgtcactaaacacaaccaaaaaggcaaccagctgttagcatccaaatggaatgaagcagaatagtcgttctcttcaacaaacgacgaagaccttcttt |
42206646 |
T |
|
| Q |
116 |
tgttac |
121 |
Q |
| |
|
|||||| |
|
|
| T |
42206645 |
tgttac |
42206640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 284
Target Start/End: Complemental strand, 42206590 - 42206489
Alignment:
| Q |
183 |
tacttgctttctcatattacaaaggtgagcagtttgtttttgctcttctgtcatgctgccaatttcacttcctgttaaactcattccagtagctatcatc |
282 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||||| || | || |||||||| |||| | ||||||||| |||||||||| ||||| |||||||| |
|
|
| T |
42206590 |
tacttgctttctcagattacaaaggtgagcaatatgtttctgtttttttgtcatgcagccagctccacttcctgctaaactcattgcagtatctatcatc |
42206491 |
T |
|
| Q |
283 |
ct |
284 |
Q |
| |
|
|| |
|
|
| T |
42206490 |
ct |
42206489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University