View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_43 (Length: 283)
Name: NF16112_high_43
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 36359711 - 36359979
Alignment:
| Q |
1 |
accgatggagcatccttgcaaggcggcaaaaagaaagaagattcatcaaaaggttggtcataattaatttgaatatgattattatatagattcattgatt |
100 |
Q |
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| T |
36359711 |
accgttggagcatccttgcaaggctgcaaaaagaaagaagattcataaaaaggttggtcataattaatttgaatatgattattatatagattcattgatt |
36359810 |
T |
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| Q |
101 |
cataattgacttgattaaaatattgggacgttgtttgtgatatcttactttctttttgttccttttgcatgagttttgccaccatatgtctccttttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
36359811 |
cataattgacttgattaaaatattgggacgttatttgtgatatcttactttctttttgttccttttgcatgagttttcccaccatatgtttccttttcca |
36359910 |
T |
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| Q |
201 |
tcgatggttccaccaccattaactaatagttgttgaacttccacaaatacaagccaatgtctttgatct |
269 |
Q |
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| T |
36359911 |
tcgatggttccaccaccattaactaatagttgttgaacttccacaaatacaagccaatgtctttgatct |
36359979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 60 - 261
Target Start/End: Original strand, 36348512 - 36348714
Alignment:
| Q |
60 |
ataattaatttgaatatgatta-ttatatagattcattgattcataattgacttgattaaaatattgggacgttgtttgtgatatcttactttctttttg |
158 |
Q |
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| T |
36348512 |
ataattaatttgaatatgattaattatatagattcattgatgcataattgacttgattaaaacattgggacgttatttgtgatatcttactttatttttg |
36348611 |
T |
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| Q |
159 |
ttccttttgcatgagttttgccaccatatgtctccttttccatcgatggttccaccaccattaactaatagttgttgaacttccacaaatacaagccaat |
258 |
Q |
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| T |
36348612 |
ttccttttgcatgagttttcccaccatatggttccttttccatctagggttccaccaccattaactactagttgttgaactttggcaaatacaagccaat |
36348711 |
T |
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| Q |
259 |
gtc |
261 |
Q |
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||| |
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| T |
36348712 |
gtc |
36348714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 21185548 - 21185618
Alignment:
| Q |
153 |
tttttgttccttttgcatgagttttgccaccatatgtctccttttccatcgatggttccaccaccattaac |
223 |
Q |
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|||||||| ||||||||||||| |||||||| || | ||| ||||||| |||||||||||||| ||||| |
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| T |
21185548 |
tttttgttggttttgcatgagttctgccaccaaatatttccatttccatgaatggttccaccacctttaac |
21185618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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