View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_5 (Length: 628)
Name: NF16112_high_5
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 71 - 616
Target Start/End: Complemental strand, 5603435 - 5602891
Alignment:
| Q |
71 |
agaaatagatctttccttccatttctgtttcacataatatataatggattcatgcatgattcatgatgttagaaagaatagacataactttcaaacaaaa |
170 |
Q |
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| T |
5603435 |
agaaatagatctttccttccatttctgtttcacataatatatcatggattcatgcatgattcatgatgttagaaagaatagacataactttcaaacaaaa |
5603336 |
T |
|
| Q |
171 |
atgagtaggcaaaattatcaacggtgccatatcccatcataatcaaatttagcaacccttattattcgatgggtcccaacatgcatgtcaattggatttt |
270 |
Q |
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| T |
5603335 |
atgaatagacataattatcaacggtgccatatcccatcataatcaaacttagcaacccttattattcgatgggtcccaacatgcatgtcaattggatttt |
5603236 |
T |
|
| Q |
271 |
tgacacgaaattaggtttaattagaccacacaaactttgttaaaatgatttctacataggttggaacattcccttcttgcatgatggtactgtccttttc |
370 |
Q |
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| T |
5603235 |
tgacacgaaattaagtttaattataccacacaaactttgttaaaatgatttctacataggttggaacattcccttcttgcatgatggtactgtccttttc |
5603136 |
T |
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| Q |
371 |
gatgattacatgacacaaaacggaacgcgttttcaacttgagtttttgtactatcaaaactcactttcaattagttgtatccatttattggttgacctat |
470 |
Q |
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| T |
5603135 |
gatgattacatgacacaaaacggaacgcgttttcaacttgagtttttgtactatcaaaactcactgtcaattagttgtatccatttattggttgacctgt |
5603036 |
T |
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| Q |
471 |
gtggtcaagccttacaagtaaacatatggttaattattaaaatatgtcatgtaataaacacaatttctgaaaaatgactctctaaaaataaaaatataca |
570 |
Q |
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| T |
5603035 |
gtggtcaagccttacaagtaaacatatggttaattattaaaatatgtcatgtaatatacacgatttctaaaaaatgactctct-aaaataaaaatataca |
5602937 |
T |
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| Q |
571 |
ttttaattatgttatttgagattcttcatgttttttactccatatt |
616 |
Q |
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| T |
5602936 |
ttttaattatgttatttgagattcttcatgtttttcactctatatt |
5602891 |
T |
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