View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_59 (Length: 236)
Name: NF16112_high_59
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_59 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 16245527 - 16245730
Alignment:
| Q |
18 |
atgaacattgtaattgaaaataagaaaggtttatgttcaatccagcttctttaataaatatgcaacttatacttcttttgtcaatggcatgatccagaca |
117 |
Q |
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| T |
16245527 |
atgaacattgtaattgaaaataagaaaggtttatgttcaatccagcttctttaataaatatgcaacttatacttcttttgtcaatggcatgatccagaca |
16245626 |
T |
|
| Q |
118 |
ctatataaatcaacaatcaagcttggattatcttgtacacaggctcagttttttgatccttcagatttatagccacttcttgtccataagtcttggcctt |
217 |
Q |
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|||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16245627 |
ctatataaatcagcaatcaagctttgattattttgtacacaggctcagttttttgatccttcagatttatagccacttcttgtccataagtcttggcctt |
16245726 |
T |
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| Q |
218 |
catc |
221 |
Q |
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|||| |
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| T |
16245727 |
catc |
16245730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 18961685 - 18961508
Alignment:
| Q |
18 |
atgaacattgtaattgaaaataagaaaggtttatgttcaatccagcttctttaataaatatgcaacttatacttcttttgtcaatggcatgatccagaca |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
18961685 |
atgaacattgtaattgaaaataagaaaggtgtatgttcaatccagcttccttaataaatatgcaacttgaacttcttttgtcaatggcatgatccagtca |
18961586 |
T |
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| Q |
118 |
ctatataaatcaacaatcaagcttggatt-atcttgtacacaggctcagttttttgatccttcagatttatagccact |
194 |
Q |
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| T |
18961585 |
ctatataaatcagcaaccaagcttggattgattttgtacacaggatcagttttttgatccttcagatttatagccact |
18961508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 173
Target Start/End: Complemental strand, 18979908 - 18979749
Alignment:
| Q |
18 |
atgaacattgtaattgaaaataagaaaggtttatgttcaatccagcttctttaataaatatgcaacttatacttcttttgtcaatggcatgatccagaca |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
18979908 |
atgaacattgtaattgaaaataagaaaggtgtatgttcaatccaacttccttaataaatatgcaacttgaacttcttttgtcaatggcatgatccagtca |
18979809 |
T |
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| Q |
118 |
c---tatataaatcaacaatcaagcttggatt-atcttgtacacaggctcagttttttga |
173 |
Q |
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| T |
18979808 |
ctattatataaatcagcaacctagattggattgattttgtacacagactcagttttttga |
18979749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 4245077 - 4245279
Alignment:
| Q |
18 |
atgaacattgtaattgaaaataagaaaggtttatgttcaatccagcttctttaataaatatgcaacttatacttcttttgtcaatggcatgatccagaca |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||||||||||| |||||| ||||||||||||| |||| |||||||||||||| ||||||||||| || |
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| T |
4245077 |
atgaacattgtaattgaaaagaagaaaggtgtatgttcaatctagcttccttaataaatatgccacttgaacttcttttgtcaagggcatgatccaatca |
4245176 |
T |
|
| Q |
118 |
ctatataaatcaacaatcaagcttggatt-atcttgtacacaggctcagttttttgatccttcagatttatagccacttcttgtccataagtcttggcct |
216 |
Q |
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|| || |||||| ||| |||||||||||| || ||||| |||||||| ||||||||||| |||||||||| ||| ||||| ||||||||||| ||||||| |
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| T |
4245177 |
ctgtacaaatcagcaaccaagcttggattgattttgtagacaggctcggttttttgatctttcagatttacagctacttcctgtccataagttttggcct |
4245276 |
T |
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| Q |
217 |
tca |
219 |
Q |
| |
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||| |
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|
| T |
4245277 |
tca |
4245279 |
T |
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