View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_60 (Length: 236)
Name: NF16112_high_60
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_60 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 42413430 - 42413653
Alignment:
| Q |
1 |
tgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaagggagtgaatgtcattttcatgagtt |
100 |
Q |
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| T |
42413430 |
tgtgaagtcccaactattgatataagaagatggagaaattgaattaggatcaatgccatgcactatttcttgaagggagtgaatgtcattttcatgagtt |
42413529 |
T |
|
| Q |
101 |
aatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggtgagaagaatgagaatttagtaggtgnnnnnnnagccattgtggaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |
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| T |
42413530 |
aatgagtggatttgtgatagagtcattgttatggttaaaagggaataaagaggcgagaagaatgagaatttagtaggtgtttttttagccattgtggaaa |
42413629 |
T |
|
| Q |
201 |
ttggttttggttttaatttgtgat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
42413630 |
ttggttttggttttaatttgtgat |
42413653 |
T |
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