View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_61 (Length: 233)
Name: NF16112_high_61
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_61 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 1074316 - 1074512
Alignment:
| Q |
20 |
atacctaaacaactaaacttcatgtaactatagcaagtgtgaactctgaagtgaattattatgttgttgaactgtagtacctaccattaccctattgccc |
119 |
Q |
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| T |
1074316 |
atacctaaacaactaaacttcatgtaactatagcaagtgtgaactgtgaagtgaattattatgttgttgaactgtagtacctaccattaccctattgccc |
1074415 |
T |
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| Q |
120 |
aatgacgcctttatgattttttacccaaaggcaacaaatttttaccctgttttggaaaagatgcacatatccagctagcacagataagtgaacaaat |
216 |
Q |
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| T |
1074416 |
aatgacgcctttatgattttttacccaaaggcaacaaatttttaccctgttttggaaaagatgcacatatccagctagcacagataagtgaacaaat |
1074512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 192
Target Start/End: Complemental strand, 19794860 - 19794736
Alignment:
| Q |
66 |
tgaagtgaattattatgttgttgaactgtagtacctaccattaccctattgcccaatgacgcctttatgattttttacccaaaggcaacaaatttttacc |
165 |
Q |
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| T |
19794860 |
tgaagtgatttatgatgctgttgaattgtagtacctaccatcaccat-gtgtccaatcacgacttgatgatttttcaactaaagacaacaaatttttatc |
19794762 |
T |
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| Q |
166 |
ctgttttggaaaagatgcacatatcca |
192 |
Q |
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| T |
19794761 |
ct-ttttgaaagagatgcacatatcca |
19794736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 38634547 - 38634671
Alignment:
| Q |
66 |
tgaagtgaattattatgttgttgaactgtagtacctaccattaccctattgcccaatgacgcctttatgattttttacccaaaggcaacaaatttttacc |
165 |
Q |
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| T |
38634547 |
tgaagtgatttatgatgctgttgaattgtagtacctaccatcaccat-gtgtccaatcacgacttgatgatttttcaactaaagacaacaaatttttatc |
38634645 |
T |
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| Q |
166 |
ctgttttggaaaagatgcacatatcca |
192 |
Q |
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| T |
38634646 |
ct-ttttgaaagagatgcacatatcca |
38634671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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