View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_63 (Length: 229)
Name: NF16112_high_63
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_63 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 3541784 - 3541596
Alignment:
| Q |
22 |
caataaaataccaaaattaccaacgaaacacacattcatgaatgtctcacatatttaagtatcaaaataaagttaacttacatcacgaagggctcgacgg |
121 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3541784 |
caatcaaataccaaaattaccaacgaaacacacattcacgaatgtctcacatatttaagtatcaaaataaagttaacttacatcacgaagggctcgacgg |
3541685 |
T |
|
| Q |
122 |
cgttctttctcttcacgaacttgacgttcaaaggcttcgcgagcatcagaatctttctcaagccgtcttttaaactcaagcctagcaag |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3541684 |
cgttctttctcttcacgaacttgacgttcaaaggcttcgcgagcatcagaatctttctcaagccgtcttttaaactcaagcctagcaag |
3541596 |
T |
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