View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_68 (Length: 211)
Name: NF16112_high_68
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_68 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 191
Target Start/End: Original strand, 33321256 - 33321432
Alignment:
| Q |
17 |
aaaataatccagctagttatgctgctggcgtgattgatcaaatcagcaggagnnnnnnnnnnnnnnctaatccaccttaaaattatttttaaggaataca |
116 |
Q |
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| T |
33321256 |
aaaataatccagctagttatgctgctggcgtgattgatcaaatcagcaggagaaaaataaaaaaaactaatccaccttaaaattatttttaaggaataca |
33321355 |
T |
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| Q |
117 |
aacaaatttaagcattctc--atgctcaagatggtattggagtcagatcttgatctcagaaaatcaaaagaagacat |
191 |
Q |
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| T |
33321356 |
aacaaatttgagcattctctcatgctcaagatggtattggagtcagatcttgatctcagaaaatcaaaagaagacat |
33321432 |
T |
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