View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_7 (Length: 515)
Name: NF16112_high_7
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 4834512 - 4834294
Alignment:
| Q |
22 |
ggcagtcacgattgaggcgacattggctgcatttgataacgatcctcattcctccacaatattaaggatcaaaacttcactcaggaaaatttgtccattt |
121 |
Q |
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| T |
4834512 |
ggcagtcacgattaaggcgacattggctgcatttgataacgatcctcattcctccacaatattaaggatcaaaacttcactcaggaaaatttgtccattt |
4834413 |
T |
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| Q |
122 |
tggttatcacaccttccaaacttaaatttgcttg-aaattgctatttgcacgcacaatctagacacaaatacaacacttagggggtaatgttttccatat |
220 |
Q |
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| T |
4834412 |
tggttatcaaaccttccaaacttaaatttgcttgaaaattgctatttgcacgcacaatctagacacaaatacaacacttagggggtagtgttctccatat |
4834313 |
T |
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| Q |
221 |
ttataaggtgaagagtacg |
239 |
Q |
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| T |
4834312 |
ttataaggtgaagagtacg |
4834294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 311 - 505
Target Start/End: Complemental strand, 4834138 - 4833947
Alignment:
| Q |
311 |
ttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgttgtctaatctccaatcttattgatagaacattaatccaacaagtttttaaatta |
410 |
Q |
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| T |
4834138 |
ttgggaaattggtacatgaaaaaagaaaggcctgcactaactttgttgtctaatctccaatcttattgatagaacataaatccaacaagtttttaaatta |
4834039 |
T |
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| Q |
411 |
ccatcaatttccaaaaatgagaaaagaatgataggatattactaagtactccatgaagttttaataatgttaactcaatgtgcacgagccctttg |
505 |
Q |
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| T |
4834038 |
ccatcaatttccaaaaatgagaaaagaatgataggatattagtaagtactccatgaagttt---taatgttaactcaatgtacatgagccctttg |
4833947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 4831811 - 4831777
Alignment:
| Q |
323 |
tacatgaaaaaagaaaggcctgcactaactttgtt |
357 |
Q |
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| T |
4831811 |
tacatgaaaaaagaaaggcctgcactaactttgtt |
4831777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 475
Target Start/End: Complemental strand, 4831703 - 4831667
Alignment:
| Q |
439 |
tgataggatattactaagtactccatgaagttttaat |
475 |
Q |
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| T |
4831703 |
tgataggatattactaagtactccatgaaattttaat |
4831667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 4834256 - 4834221
Alignment:
| Q |
277 |
attgaatgtactgcaagtcaatactgattagctgtt |
312 |
Q |
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| T |
4834256 |
attgaatgtactgcaattcaatactgattagctgtt |
4834221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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