View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_high_9 (Length: 489)
Name: NF16112_high_9
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 142 - 473
Target Start/End: Original strand, 1500547 - 1500878
Alignment:
| Q |
142 |
cgaataattacccttcctcttcttgcttgaaactgataaaaagcagtagaatcagtagcagtacaattcttaccaacccttcttctaaactcagcaaaat |
241 |
Q |
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| T |
1500547 |
cgaataattacccttcctcttcttgcttgaaactgataaaaagcagtagaatcagtagcagtacaattcttaccaacccttcttctaaactcagcaaaat |
1500646 |
T |
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| Q |
242 |
caataagatcattaccaacaccaccttcatcactcataattctagctaaaagaccaacaacaggaagagcaccaataactttgctaacaacatttgaaaa |
341 |
Q |
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| T |
1500647 |
caataagatcattaccaacaccaccttcatcactcataattctagctaaaagaccaacaacaggaagagcaccaataactttgctaacaacatttgaaaa |
1500746 |
T |
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| Q |
342 |
tgagtttggattctccatgtaagctttaatggtgaaatttgtagtaggttttgaagtttgttgttttgtttgatgatgaacatggtggtggctgtggaag |
441 |
Q |
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| T |
1500747 |
tgagtttggattctccatgtaagctttaatggtgaaatttgtagtaggttttgaagtttgttgttttgtttgatgatgaacatggtggtggctgtggaag |
1500846 |
T |
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| Q |
442 |
agaagtgatgatgaagatggtgatgtgagttt |
473 |
Q |
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| T |
1500847 |
agaagtgatgatgaagatggtgatgtgagttt |
1500878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 75
Target Start/End: Original strand, 1500420 - 1500480
Alignment:
| Q |
14 |
atgcaacattaatcaaattataagattaaaaagataaaaattttgaacatggaattaacctc |
75 |
Q |
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| T |
1500420 |
atgcaacattaatcaaattataagattaaaaagat-aaaattttgaacatgaaattaacctc |
1500480 |
T |
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