View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_10 (Length: 500)
Name: NF16112_low_10
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 16 - 473
Target Start/End: Complemental strand, 46030952 - 46030499
Alignment:
| Q |
16 |
atattaactacgtttaaaaactactaattttcaannnnnnncgttcactaattctatctgtcaggtccgttaaatgcttcttttactagttgggctagac |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46030952 |
atattaactacgtttaaaaactactaattttcaatttttttcgttgactaattctatctgtcaggtccgttaaatgcttcttttactagttgggctagac |
46030853 |
T |
|
| Q |
116 |
tgacattttgtcttgcagatatataaaaatttgacagttaaagacaaatattgtgaaatgtaggctaaggtattcaattcaagcatatataaaaccaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46030852 |
tgacattttgtcttgcagatatataaaaatttgacagttaaagacaaatattgtgaaatgtaggctaaggtattcaattcaagcatatataaaaccgaaa |
46030753 |
T |
|
| Q |
216 |
ttatagtgaaatgtagcacattatttccttttctatttgtcctgaaaactagtaataaacctggtgtatagcatccctcatatttaaaaacatgaagaaa |
315 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46030752 |
ttatagtgaaatgtagcacattgtttccttttctatttatcctgaaaactagtaataaacctggtgtatagcatccctcatatttaaaaacatgaagaaa |
46030653 |
T |
|
| Q |
316 |
ttccgagataaaacctagatttggtgaaattttgttgtgtcatggcatgtgtatttatttctaccagaaaaccaataaatcaatcaatattattaaactt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46030652 |
ttccgagataaaacctagatttggtgaaattttgttgtgtcatggcatgtgtatttatttctaccagaaaaccaataaat----caatattattaaactt |
46030557 |
T |
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| Q |
416 |
gacaaacctttctgtggtagtcactaaactttcttgtttgtcatatatgtgagttttt |
473 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46030556 |
gacaaacctttctgtggcagtcactaaactttcttgtttgtcatatatgtgagttttt |
46030499 |
T |
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