View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_12 (Length: 460)

Name: NF16112_low_12
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_12
NF16112_low_12
[»] chr8 (13 HSPs)
chr8 (31-183)||(26175147-26175299)
chr8 (290-381)||(4677331-4677422)
chr8 (290-381)||(26174862-26174953)
chr8 (290-381)||(7275751-7275842)
chr8 (167-222)||(26175016-26175071)
chr8 (53-183)||(7275421-7275553)
chr8 (306-381)||(29864914-29864989)
chr8 (382-444)||(40270478-40270540)
chr8 (382-428)||(31343172-31343218)
chr8 (141-182)||(4677507-4677548)
chr8 (391-432)||(19183515-19183556)
chr8 (172-206)||(7275636-7275670)
chr8 (382-444)||(23584129-23584191)
[»] chr3 (5 HSPs)
chr3 (31-183)||(4607167-4607319)
chr3 (294-381)||(42657413-42657500)
chr3 (382-444)||(48099504-48099566)
chr3 (169-210)||(10745215-10745256)
chr3 (167-206)||(42657287-42657326)
[»] scaffold1412 (3 HSPs)
scaffold1412 (31-183)||(3-155)
scaffold1412 (291-381)||(393-483)
scaffold1412 (167-206)||(268-307)
[»] scaffold0001 (3 HSPs)
scaffold0001 (31-183)||(144901-145053)
scaffold0001 (291-381)||(145252-145342)
scaffold0001 (167-206)||(145127-145166)
[»] chr6 (5 HSPs)
chr6 (31-183)||(6823275-6823427)
chr6 (291-381)||(6823664-6823754)
chr6 (382-444)||(16594766-16594828)
chr6 (167-206)||(6823540-6823579)
chr6 (382-443)||(28081567-28081628)
[»] chr1 (11 HSPs)
chr1 (38-182)||(35267749-35267893)
chr1 (290-381)||(9906424-9906515)
chr1 (290-381)||(18703633-18703724)
chr1 (93-183)||(18703387-18703478)
chr1 (381-444)||(19330122-19330185)
chr1 (382-444)||(9932222-9932284)
chr1 (56-183)||(9906100-9906226)
chr1 (169-210)||(35267989-35268030)
chr1 (172-206)||(18703515-18703549)
chr1 (381-437)||(45029889-45029945)
chr1 (381-437)||(45034740-45034796)
[»] chr7 (8 HSPs)
chr7 (31-139)||(34512596-34512704)
chr7 (290-381)||(7734751-7734842)
chr7 (290-381)||(41832043-41832134)
chr7 (52-183)||(41832335-41832468)
chr7 (290-348)||(34512293-34512351)
chr7 (52-183)||(7737011-7737142)
chr7 (49-182)||(219317-219448)
chr7 (167-206)||(34512434-34512473)
[»] chr5 (8 HSPs)
chr5 (290-381)||(21256057-21256148)
chr5 (290-381)||(35305225-35305316)
chr5 (52-183)||(21256349-21256482)
chr5 (52-183)||(41949642-41949773)
chr5 (35-182)||(17823254-17823401)
chr5 (116-183)||(35304957-35305024)
chr5 (382-444)||(1545992-1546054)
chr5 (169-207)||(35305105-35305143)
[»] chr4 (5 HSPs)
chr4 (290-381)||(5444177-5444268)
chr4 (52-183)||(5444422-5444553)
chr4 (171-222)||(5444335-5444386)
chr4 (52-145)||(11814885-11814977)
chr4 (169-207)||(55850266-55850304)
[»] chr2 (6 HSPs)
chr2 (290-381)||(24038896-24038987)
chr2 (290-381)||(31270071-31270162)
chr2 (52-183)||(24039188-24039320)
chr2 (52-183)||(31269738-31269870)
chr2 (116-182)||(36316583-36316650)
chr2 (382-444)||(40623194-40623256)
[»] scaffold0525 (2 HSPs)
scaffold0525 (290-381)||(6532-6623)
scaffold0525 (52-139)||(2305-2392)
[»] scaffold0009 (1 HSPs)
scaffold0009 (382-444)||(31999-32061)
[»] scaffold0263 (1 HSPs)
scaffold0263 (90-183)||(22628-22721)
[»] scaffold0655 (1 HSPs)
scaffold0655 (390-444)||(5756-5810)
[»] scaffold0134 (1 HSPs)
scaffold0134 (390-444)||(40925-40979)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 26175299 - 26175147
Alignment:
Q  31 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 130  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26175299 aaaaaatagtcatcaaacaagtgcttatccaacaagaagcaaccaaaactcaagattgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 26175200  T
Q  131 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||    
T  26175199 atccggtagaagcaatcatcaacaaagccaattaaggcaccacgcttaaccat 26175147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 4677422 - 4677331
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4677422 tgcaaggaagggccaaaatctacaatggaaggaggtcatatgttgaataaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 4677331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 26174953 - 26174862
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||    
T  26174953 tgcaaggaagggccaaaatctacaatggaaggaggtcatatgttgaacaaacgtcacaccaaaggtaccatgaagtgacaagaccaaggttc 26174862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 7275751 - 7275842
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  7275751 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacatcaaaggtaccatgaagcaacaagaccaaggttc 7275842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 26175071 - 26175016
Alignment:
Q  167 gcacaacgcttaaccattcatgacggaagcttatcaacatggctgatccctcatga 222  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  26175071 gcacaacgcttaaccattcatgacgaaagcttatcaacatggctgatccatcatga 26175016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 183
Target Start/End: Original strand, 7275421 - 7275553
Alignment:
Q  53 gcttatccaacaagaaacaaccacaactcaaggttgaaccaa-ttgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 150  Q
    |||||||||||||||   ||||||||||||||||  || ||  ||| ||||||||||| |||| |||||||||||||||||||||||| || ||||||||    
T  7275421 gcttatccaacaagaggaaaccacaactcaaggtgtaatcaccttggaggaagaagcagcaaaccaacgcttaaccaccatccggtagaagccaatcatc 7275520  T
Q  151 aacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||| ||| |    ||||||||| ||||||||||    
T  7275521 aacaaagccttaaaaggcacaatgcttaaccat 7275553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 29864914 - 29864989
Alignment:
Q  306 aatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    |||||||||||||||||| |||||||||  |||||||||||||| ||||| ||||| |||| ||| ||||| ||||    
T  29864914 aatctacaatggaaggagatcatatgttagacaaacttcacacctaaggttccatgtagcaccaataccaaagttc 29864989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 40270540 - 40270478
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| | ||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||    
T  40270540 attgagatgaacattcattttgttcgggaaaaggtcgctcgtggtcaggctcgcgtccttcat 40270478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 428
Target Start/End: Original strand, 31343172 - 31343218
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtca 428  Q
    ||||||| ||||||||||||| |||||||||| ||||||||||||||    
T  31343172 attgagatggacattcattttgttcgggaaaaagtagctcgtggtca 31343218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 182
Target Start/End: Complemental strand, 4677548 - 4677507
Alignment:
Q  141 agcaatcatcaacgaagtcaattaaggcacaacgcttaacca 182  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  4677548 agcaatcatcaacaaagccaattaaggcacaacgcttaacca 4677507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 432
Target Start/End: Original strand, 19183515 - 19183556
Alignment:
Q  391 gacattcattttattcgggaaaaggtagctcgtggtcaggca 432  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  19183515 gacattcattttgttcgggaaaaagtagctcgtggtcaggca 19183556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 7275636 - 7275670
Alignment:
Q  172 acgcttaaccattcatgacggaagcttatcaacat 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  7275636 acgcttaaccattcatgacagaagcttatcaacat 7275670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 23584129 - 23584191
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| ||||||||| ||| |||| | |||||| |||||||| ||||||||||| ||||||    
T  23584129 attgagatggacattcactttgttcgaggaaaggtcgctcgtggccaggcacgcgtccttcat 23584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 2e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 4607319 - 4607167
Alignment:
Q  31 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 130  Q
    |||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  4607319 aaaacaaagtcatcaaacaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaatttcaggatgaagcatcaaagcaacgcttaaacacc 4607220  T
Q  131 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||||||||| ||| | |||| || ||| |||||| ||||||||||||||||||    
T  4607219 atccggtagaagccaacatcgacaaagccaattagggcacaacgcttaaccat 4607167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 294 - 381
Target Start/End: Original strand, 42657413 - 42657500
Alignment:
Q  294 aggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||| ||| | ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42657413 aggaagggccaaagtttacgatggaaggaggtcatatgttgatcaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 42657500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 48099566 - 48099504
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| ||||||||| ||| |||| ||||||||||||||||| ||||||||||| ||||||    
T  48099566 attgagatggacattcactttgttcgagaaaaggtagctcgtggccaggcacgcgtccttcat 48099504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 10745256 - 10745215
Alignment:
Q  169 acaacgcttaaccattcatgacggaagcttatcaacatggct 210  Q
    ||||| |||||||||||||||| |||||||||||||||||||    
T  10745256 acaacacttaaccattcatgacagaagcttatcaacatggct 10745215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 42657287 - 42657326
Alignment:
Q  167 gcacaacgcttaaccattcatgacggaagcttatcaacat 206  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  42657287 gcacaacgcttaaccattcatgacagaagcctatcaacat 42657326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 3 - 155
Alignment:
Q  31 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 130  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  3 aaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacc 102  T
Q  131 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||||||||| ||| |  ||| || ||| ||   ||||||||||||||||||||    
T  103 atccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 393 - 483
Alignment:
Q  291 gcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  393 gcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaaggtaccatgaagcaacaagaccaaggttc 483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 268 - 307
Alignment:
Q  167 gcacaacgcttaaccattcatgacggaagcttatcaacat 206  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  268 gcacaatgcttaaccattcatgacagaagcttatcaacat 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 93; Significance: 4e-45; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 144901 - 145053
Alignment:
Q  31 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 130  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  144901 aaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacc 145000  T
Q  131 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||||||||| ||| |  ||| || ||| ||   ||||||||||||||||||||    
T  145001 atccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 145053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 145252 - 145342
Alignment:
Q  291 gcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  145252 gcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaaggtaccatgaagcaacaagaccaaggttc 145342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 145127 - 145166
Alignment:
Q  167 gcacaacgcttaaccattcatgacggaagcttatcaacat 206  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  145127 gcacaatgcttaaccattcatgacagaagcttatcaacat 145166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 4e-45; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 31 - 183
Target Start/End: Original strand, 6823275 - 6823427
Alignment:
Q  31 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 130  Q
    |||| ||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6823275 aaaatatagtcatcaaacaagagcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaaggaaggagcatcaaagcaacgcttaaccacc 6823374  T
Q  131 atccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||||||||| ||| |  ||| || ||| ||   ||||||||||||||||||||    
T  6823375 atccggtagaagccaatatccacaaagccataaaaggcacaacgcttaaccat 6823427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 6823664 - 6823754
Alignment:
Q  291 gcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    |||||||||||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  6823664 gcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaagataccatgaagcaacaagaccaaggttc 6823754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 16594766 - 16594828
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||| ||||| ||||| ||||||    
T  16594766 attgagatggacattcattttgttcgggaaaaggtcgctcgtggccaggctcgcgtccttcat 16594828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 6823540 - 6823579
Alignment:
Q  167 gcacaacgcttaaccattcatgacggaagcttatcaacat 206  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  6823540 gcacaacgcttaaccattcatgccagaagcttatcaacat 6823579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 443
Target Start/End: Original strand, 28081567 - 28081628
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttca 443  Q
    ||||||| |||||| |||||| |||| |||||||||||||| ||||| |  |||||||||||    
T  28081567 attgagatggacatccattttgttcgtgaaaaggtagctcgaggtcatgttcgcgttcttca 28081628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 4e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 38 - 182
Target Start/End: Original strand, 35267749 - 35267893
Alignment:
Q  38 agtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggt 137  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||  |||||||| |||||||||||||||||||||||||||||||||     
T  35267749 agtcatcaaacaagtgcttatccaacaagaagaaaccacaactcaaggtttaaccgcttgaaggatgaagcatcaaagcaacgcttaaccaccatccggc 35267848  T
Q  138 aggagcaatcatcaacgaagtcaattaaggcacaacgcttaacca 182  Q
    || ||||||||||||| | | ||||||||||||||| ||||||||    
T  35267849 agaagcaatcatcaacaatgccaattaaggcacaacacttaacca 35267893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 9906424 - 9906515
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9906424 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaaggtaccatgaagcaacaagaccaaggttc 9906515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 18703633 - 18703724
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18703633 tgcaaggaagggccaaagtctacaatggaatgaggtcatatgttgaacaaacttcacaccaaagataccatgaagcaacaagaccaaggttc 18703724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 18703387 - 18703478
Alignment:
Q  93 aattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| || |||||||||||  || |    ||||||||||||||||||||    
T  18703387 aattggaggaagaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcatcaacagagccttaaaaggcacaacgcttaaccat 18703478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 444
Target Start/End: Original strand, 19330122 - 19330185
Alignment:
Q  381 cattgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    |||||||| |||| |||||||| ||||| |||| |||||||||||||||||||| |||||||||    
T  19330122 cattgagatggacgttcattttgttcggaaaaaagtagctcgtggtcaggcacgtgttcttcat 19330185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 9932284 - 9932222
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| ||||||||| ||| |||| ||||||||||||||||| ||||||||||| ||||||    
T  9932284 attgagatggacattcactttgttcgagaaaaggtagctcgtggccaggcacgcgtccttcat 9932222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 56 - 183
Target Start/End: Original strand, 9906100 - 9906226
Alignment:
Q  56 tatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatcaacg 154  Q
    ||||||||||||   ||||||||||||||||  || || ||| ||  ||||||| |||| |||||||||||||||||||||||| || |||||| ||||     
T  9906100 tatccaacaagaggaaaccacaactcaaggtgtaatcacttggag--agaagcaacaaaccaacgcttaaccaccatccggtagaagccaatcaacaaca 9906197  T
Q  155 aagtcaattaaggcacaacgcttaaccat 183  Q
    ||| |    ||||||||||||||||||||    
T  9906198 aagccttaaaaggcacaacgcttaaccat 9906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 35267989 - 35268030
Alignment:
Q  169 acaacgcttaaccattcatgacggaagcttatcaacatggct 210  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  35267989 acaacgcttaaccattcatgacagaagcttatcaacatggct 35268030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 18703515 - 18703549
Alignment:
Q  172 acgcttaaccattcatgacggaagcttatcaacat 206  Q
    ||||||||||||||||||| |||||||||||||||    
T  18703515 acgcttaaccattcatgacagaagcttatcaacat 18703549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 45029889 - 45029945
Alignment:
Q  381 cattgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgt 437  Q
    |||||| | |||||| || ||| | |||||||| |||||||||||||||||||||||    
T  45029889 cattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcaggcacgcgt 45029945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Original strand, 45034740 - 45034796
Alignment:
Q  381 cattgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgt 437  Q
    |||||| | |||||| || ||| | |||||||| |||||||||||||||||||||||    
T  45034740 cattgaaatggacatacactttgtacgggaaaaagtagctcgtggtcaggcacgcgt 45034796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 31 - 139
Target Start/End: Complemental strand, 34512704 - 34512596
Alignment:
Q  31 aaaacatagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccacc 130  Q
    |||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||    
T  34512704 aaaacatagtcatcaagcaagtgcttatccaacaagaagcaaccacaactcaaggttgaaccaattgaatgaaggagcatcaaagcaacgcttaaccacc 34512605  T
Q  131 atccggtag 139  Q
    |||||||||    
T  34512604 atccggtag 34512596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 7734842 - 7734751
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||| |  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  7734842 tgcaaggaaggccccaaatctacaatggaaggagatcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagacctaggttc 7734751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 41832134 - 41832043
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  41832134 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcataccaaaggtaccatgaagcaacaagaccaaggttc 41832043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 41832468 - 41832335
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttg-aaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcat 149  Q
    ||||||||||||||||   ||||||||||||||| || ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || |||||||    
T  41832468 tgcttatccaacaagaggaaaccacaactcaagggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcat 41832369  T
Q  150 caacgaagtcaattaaggcacaacgcttaaccat 183  Q
    |||| ||| |    ||||||||||||||||||||    
T  41832368 caacaaagccttaaaaggcacaacgcttaaccat 41832335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 34512351 - 34512293
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacac 348  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  34512351 tgcaaggaagggccaaagtctacaatggaaggaggtcatatgttgaacaaacttcacac 34512293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 7737142 - 7737011
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatca 151  Q
    ||||||| ||||||||   ||||||||||||||||| ||||| ||| ||||||||||| |||| |||||||||||  ||||||| ||| ||| | ||||     
T  7737142 tgcttattcaacaagaggaaaccacaactcaaggtttaaccacttggaggaagaagcaacaaaacaacgcttaactgccatccgatagaagccaacatcc 7737043  T
Q  152 acgaagtcaattaaggcacaacgcttaaccat 183  Q
    || ||| || | |||||||||| |||||||||    
T  7737042 acaaagccattgaaggcacaacacttaaccat 7737011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 49 - 182
Target Start/End: Original strand, 219317 - 219448
Alignment:
Q  49 aagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatca 148  Q
    ||||||||||||||||||||  ||| ||||||||||||| ||||  |||||| || || || |||| ||||| |||||||||||| || || ||   |||    
T  219317 aagtgcttatccaacaagaagaaac-acaactcaaggtttaaccgcttgaagaaaaaa-caacaaatcaacgtttaaccaccatctggcagaagttgtca 219414  T
Q  149 tcaacgaagtcaattaaggcacaacgcttaacca 182  Q
    ||||| ||| |||||| || ||||||||||||||    
T  219415 tcaacaaagacaattaggggacaacgcttaacca 219448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 206
Target Start/End: Complemental strand, 34512473 - 34512434
Alignment:
Q  167 gcacaacgcttaaccattcatgacggaagcttatcaacat 206  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  34512473 gcacaacgcttaaccattcatgacagaagcttattaacat 34512434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 6e-35; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 21256148 - 21256057
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21256148 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaaggtaccatgaagcaacaagaccaaggttc 21256057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 35305225 - 35305316
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  35305225 tgcaaggaagggtcaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccctgaagcaacaagatcaaggttc 35305316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 21256482 - 21256349
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 150  Q
    ||||||||||||||||   ||||||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || ||||||||    
T  21256482 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatc 21256383  T
Q  151 aacgaagtc-aattaaggcacaacgcttaaccat 183  Q
    ||| ||| |  |  ||||||||||||||||||||    
T  21256382 aacaaagccttaaaaaggcacaacgcttaaccat 21256349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 41949642 - 41949773
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatca 151  Q
    ||||||||||||||||   ||||||||||||| ||  ||||| ||| ||||||||||| |||| |||| ||||||||||||||||||| ||| | ||||     
T  41949642 tgcttatccaacaagaggaaaccacaactcaatgtgtaaccacttggaggaagaagcaacaaaccaacacttaaccaccatccggtagaagccaacatcg 41949741  T
Q  152 acgaagtcaattaaggcacaacgcttaaccat 183  Q
    || ||| ||   ||||||||||||||||||||    
T  41949742 acaaagccataaaaggcacaacgcttaaccat 41949773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 17823401 - 17823254
Alignment:
Q  35 catagtcaccaaacaagtgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatcc 134  Q
    |||||||| ||| ||| ||||||| |||||||||  ||||| || |||||||| ||||| ||| ||||||||||| |||| |||| ||||| |||||| |    
T  17823401 catagtcaacaagcaaatgcttattcaacaagaagaaaccataattcaaggtttaaccacttggaggaagaagcaacaaatcaacccttaatcaccattc 17823302  T
Q  135 ggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaacca 182  Q
       || |   ||||||||| ||| | ||||||||||||||||||||||    
T  17823301 aacagaaattatcatcaacaaagccgattaaggcacaacgcttaacca 17823254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 35304957 - 35305024
Alignment:
Q  116 caacgcttaaccaccatccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    |||||||||||||||||||||||| ||||| || | || ||| ||   ||||||||||||||||||||    
T  35304957 caacgcttaaccaccatccggtagaagcaaacaaccacaaagccataaaaggcacaacgcttaaccat 35305024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 444
Target Start/End: Complemental strand, 1546054 - 1545992
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| ||||||||||||| | |||||||| ||||   |||||||||||||||| ||||||    
T  1546054 attgagatggacattcattttgtacgggaaaaagtagtcggtggtcaggcacgcgtacttcat 1545992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 35305105 - 35305143
Alignment:
Q  169 acaacgcttaaccattcatgacggaagcttatcaacatg 207  Q
    |||||||||||| ||||||||||||||| ||||||||||    
T  35305105 acaacgcttaactattcatgacggaagcatatcaacatg 35305143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 6e-35; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 5444268 - 5444177
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5444268 tgcaaggaagggccaaaatcttcaatggaaggagatcatatgttgaacaaacttcacaccaaaggcaccatgaagcaacaagaccaaggttc 5444177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 5444553 - 5444422
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatca 151  Q
    ||||||||||||||||   |||||||||||||||| ||| || ||| ||||||||||| ||||||||||||||||||||||||||||| ||| | |||||    
T  5444553 tgcttatccaacaagaggaaaccacaactcaaggtggaatcatttggaggaagaagcaacaaagcaacgcttaaccaccatccggtagaagccaacatca 5444454  T
Q  152 acgaagtcaattaaggcacaacgcttaaccat 183  Q
    || ||| ||   ||||||||||||||||||||    
T  5444453 acaaagccataaaaggcacaacgcttaaccat 5444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 5444386 - 5444335
Alignment:
Q  171 aacgcttaaccattcatgacggaagcttatcaacatggctgatccctcatga 222  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  5444386 aacgcttaaccattcatgacggaagcgtatcaacatggctgatccatcatga 5444335  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 11814977 - 11814885
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaa 145  Q
    |||||||||||| |||   ||||||||||||||||| ||||  |||| | |||||||| |||| |||||||||||||||||  ||||| |||||    
T  11814977 tgcttatccaaccagaggaaaccacaactcaaggtttaaccgcttgatg-aagaagcaacaaaacaacgcttaaccaccatatggtagaagcaa 11814885  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 55850266 - 55850304
Alignment:
Q  169 acaacgcttaaccattcatgacggaagcttatcaacatg 207  Q
    ||||||||||||||||||||| |||||| ||||||||||    
T  55850266 acaacgcttaaccattcatgatggaagcatatcaacatg 55850304  T

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Target: chr2 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 381
Target Start/End: Complemental strand, 24038987 - 24038896
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24038987 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcacaccaaaggtaccatgaagcaacaagaccaaggttc 24038896  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 31270071 - 31270162
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| | ||||||||    
T  31270071 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactacacaccaaaggtaccataaagcaacaaaaacaaggttc 31270162  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 183
Target Start/End: Complemental strand, 24039320 - 24039188
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 150  Q
    ||||||||||||||||   ||||||||||||||||  ||||| ||| ||||||||||| |||| |||||||||||||||||| ||||| || ||||||||    
T  24039320 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacaaaccaacgcttaaccaccatctggtagaagccaatcatc 24039221  T
Q  151 aacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||| ||| |    ||||||||||||||||||||    
T  24039220 aacaaagccttaaaaggcacaacgcttaaccat 24039188  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 183
Target Start/End: Original strand, 31269738 - 31269870
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggag-caatcatc 150  Q
    ||||||||||||||||   ||||||||||||||||  ||||| ||| ||||||||||| || | |||||||||||||||||| ||||| || ||||||||    
T  31269738 tgcttatccaacaagaggaaaccacaactcaaggtgtaaccacttggaggaagaagcaacagaccaacgcttaaccaccatctggtagaagccaatcatc 31269837  T
Q  151 aacgaagtcaattaaggcacaacgcttaaccat 183  Q
    ||| ||| |    ||||||||||||||||||||    
T  31269838 aacaaagccttaaaaggcacaacgcttaaccat 31269870  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 36316583 - 36316650
Alignment:
Q  116 caacgcttaaccaccatccggtaggagcaatcatc-aacgaagtcaattaaggcacaacgcttaacca 182  Q
    |||||||||||||||||| ||||| ||||| || | ||| ||| ||||||||||||||||||||||||    
T  36316583 caacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaacca 36316650  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 40623194 - 40623256
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| |||||||| |||| |||||||||| |||||| |||||||||||| ||| ||||||    
T  40623194 attgagatggacattctttttgttcgggaaaaagtagcttgtggtcaggcacacgtacttcat 40623256  T

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Target: scaffold0525 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 381
Target Start/End: Original strand, 6532 - 6623
Alignment:
Q  290 tgcaaggaagggcgaaaatctacaatggaaggaggtcatatgttgaacaaacttcacaccaaaggtaccatgaagcaacaagaccaaggttc 381  Q
    ||||||||||||| ||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  6532 tgcaaggaagggccaaagtttacaatggaaggaggtcatatgttgaacaaactgcataccaaaggtaccatgaagcaacaagaccaaggttc 6623  T

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Target: scaffold0525; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 52 - 139
Target Start/End: Original strand, 2305 - 2392
Alignment:
Q  52 tgcttatccaacaagaaacaaccacaactcaaggttgaaccaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtag 139  Q
    ||||||||||||||||   ||||||||||||||||  || || ||| ||||||||||| |||| ||||||||||||||||||||||||    
T  2305 tgcttatccaacaagaggaaaccacaactcaaggtgtaatcacttggaggaagaagcaacaaaccaacgcttaaccaccatccggtag 2392  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 382 - 444
Target Start/End: Original strand, 31999 - 32061
Alignment:
Q  382 attgagacggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||    
T  31999 attgagatggacattcattttgttcgggaaaaggttgctcgtggtcaggctcgcgtccttcat 32061  T

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Target: scaffold0263 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 183
Target Start/End: Complemental strand, 22721 - 22628
Alignment:
Q  90 accaattgaaggaagaagcatcaaagcaacgcttaaccaccatccggtaggagcaatcatcaacgaagtcaattaaggcacaacgcttaaccat 183  Q
    |||| ||| ||||||||||| |||| |||||||||||||||||||||| | ||| | |||| || ||| ||   ||| ||||||||||||||||    
T  22721 accacttggaggaagaagcaacaaaccaacgcttaaccaccatccggtggaagccaacatcgacaaagccataaaagacacaacgcttaaccat 22628  T

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Target: scaffold0655 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 5810 - 5756
Alignment:
Q  390 ggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||||| ||| | |||||||| |||||||||||| |||||||||| ||||||    
T  5810 ggacattcactttgtacgggaaaaagtagctcgtggtgaggcacgcgtacttcat 5756  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 40925 - 40979
Alignment:
Q  390 ggacattcattttattcgggaaaaggtagctcgtggtcaggcacgcgttcttcat 444  Q
    ||||||||| ||| | ||||||||||||||  |||||||||||||||| ||||||    
T  40925 ggacattcactttgtacgggaaaaggtagcctgtggtcaggcacgcgtacttcat 40979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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