View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_13 (Length: 442)
Name: NF16112_low_13
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 14 - 427
Target Start/End: Complemental strand, 48330238 - 48329825
Alignment:
| Q |
14 |
atataattcacttttgacgctcaagcgactgactcttaatgctgattgtgttgtggttcttgacaatactgcacttaatagaattgctgtggagcgactt |
113 |
Q |
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| T |
48330238 |
atataattcacttttgacgctcaagcgactgactcttaatgctgattgtgttgtggttcttgacaatactgcacttaatagaattgctgtggagcgactt |
48330139 |
T |
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| Q |
114 |
catttatcaaatccaacatttgctcaaacaaattccctagtttctactgttatgtctgccagcacaaccactcttcgttatccaggatacatgaataatg |
213 |
Q |
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| T |
48330138 |
catttatcaaatccaacatttgctcaaacaaattccctagtttctactgtgatgtctgccagcacaaccactcttcgttatccaggatacatgaataatg |
48330039 |
T |
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| Q |
214 |
acttggttggtctccttgcctctttgattccaacaccaagatgccattttctaatgacaggatatacgcctctgacagtggaacgtcaggtgagaccttt |
313 |
Q |
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| T |
48330038 |
acctggttggtctccttgcctctttgattccaacaccaagatgccattttctaatgacaggatatacgcctctgacagtggaacgtcaggtgagaccttt |
48329939 |
T |
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| Q |
314 |
gtgtcattttctccataaaaatgatatttggagcatcaagatttttcctaaatttttgtcctgtaaagattttgttgttttattgaactggaagcaatct |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48329938 |
gtgtcattttctccataaaaatgatatttggagcatcaagatttttcctaaatttttgtcctgtaaagattctgttgttttattgaactggaagcaatct |
48329839 |
T |
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| Q |
414 |
acagagaaactatt |
427 |
Q |
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| T |
48329838 |
acagagaaactatt |
48329825 |
T |
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