View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_14 (Length: 435)
Name: NF16112_low_14
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 45682223 - 45681878
Alignment:
| Q |
1 |
aattaaaggtatgtcctacaaa-gattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggctgcagaata |
99 |
Q |
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| T |
45682223 |
aattaaaggtatgtcctacaaaagattaatatcacataatcccatggacaataatgccacacatttctttccttatgtaagtcatcttggctgcagaata |
45682124 |
T |
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| Q |
100 |
taaatgggggaccaggggccacaattactaaaatttcnnnnnnnnnnnnnnnnnnnnnnnntatataaacaatcccagctcagcattgataagacaaatt |
199 |
Q |
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| T |
45682123 |
taaatgggggaccaggggccacaattactaaaatttccacatacacaaaaacacacacacatatataaacaatcccagctcagcattgataagacaaatt |
45682024 |
T |
|
| Q |
200 |
aattataatatactgtacagcatattatacaagtgattttggattagatttgtctcaactattgtctgtctt-----gattattaggacggttcaatttg |
294 |
Q |
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| T |
45682023 |
aattataatatactgtacagcatattgtacaagtgattttggattagatttgtctcaactattgtctgtcttgatttgattattaggacggttcaatttg |
45681924 |
T |
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| Q |
295 |
agaacttgacatacctattgactcctaccttcaatgactaaggttc |
340 |
Q |
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| T |
45681923 |
agaacttgacatacctattgactcctaccttcaatgactaaggttc |
45681878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 364 - 417
Target Start/End: Complemental strand, 45681824 - 45681771
Alignment:
| Q |
364 |
cagtccttcccatacatgcatgtttcttgtacaacattttttcaaacaagaatt |
417 |
Q |
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| T |
45681824 |
cagtccttcccatacatgcatgtttcttgtacaacattttttcaaacaagaatt |
45681771 |
T |
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