View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_16 (Length: 424)
Name: NF16112_low_16
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 38504611 - 38504770
Alignment:
| Q |
18 |
acaaactcatggaaccaagcatcatcagaatttcgaatcaattccccaaagcttgaaatattagggttatcgaggctacttccatcaacattcaagatca |
117 |
Q |
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| T |
38504611 |
acaaactcatggaaccaagcaccatcagaatttcgaatcaattccccaaagtttgaaatactagggttatcgaggctactcccatcaacattcaagatca |
38504710 |
T |
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| Q |
118 |
tttcaataccactatgatcgttctatcaaatcacttaaaatcatttgattcacttttatg |
177 |
Q |
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| T |
38504711 |
tttcaataccatcatgatcgttccatcaaatcatttaaaatcatttgattcacttttatg |
38504770 |
T |
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Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 284 - 410
Target Start/End: Original strand, 38504877 - 38505008
Alignment:
| Q |
284 |
cggtttaatgatggcgagttgtactatagggaatgattaccccatgctcctcctagttat-----atgatccattccatggtttgtgcaattcttgtccg |
378 |
Q |
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| T |
38504877 |
cggtttaatgatggcgagttgtactatagggaatgattaccccatgctcctcctagttatattatatgatccattccatggtgtgtgcaattcttgtccg |
38504976 |
T |
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| Q |
379 |
tatcttgtcactagctgcattattctcctttg |
410 |
Q |
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| T |
38504977 |
tatcctgtcactagctgcattattctcctttg |
38505008 |
T |
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