View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_17 (Length: 407)
Name: NF16112_low_17
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 22 - 275
Target Start/End: Original strand, 40658403 - 40658664
Alignment:
| Q |
22 |
atggcaacgttgtaattgagaaggtccaggacaatatagtttctaatcaccagcaccttaaaaata--atttggcactgttggttaggaatgggaa---- |
115 |
Q |
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| T |
40658403 |
atggcaacgttgttattgagaaggtccaggacaatatagtttctaatcaccagcaccttaaaaatataatttggcactgttggttaggaatgggaattgg |
40658502 |
T |
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| Q |
116 |
---caacatttattaaccaacaatcggagccatttgttgcatcactggctaataatacttatttcttacttgcgttatgagtccaccaaagcctaggact |
212 |
Q |
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| T |
40658503 |
gaacaacatttattaaccaacaatcggagccatttgttgcatcaccggctaatactatttcttactt-ctcgcgttatgattccaccaaagcctaggact |
40658601 |
T |
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| Q |
213 |
tagggccggttcaaggaccaagcatcccaaacnnnnnnnttgctctttaagattgcttactat |
275 |
Q |
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| T |
40658602 |
tagggccggttcaaggaccaagcatcccaaacaaaaaaattgctctttaagattgcttactat |
40658664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 40658664 - 40658738
Alignment:
| Q |
325 |
tcttcattgttcataaaattttgatttttctcattaaactaatacatcaaatcattctctcaaccctttcatctc |
399 |
Q |
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| T |
40658664 |
tcttcattgttcataaaattttgatttttctcattaaactaatacatcaaatcattctctcagccctttcatctc |
40658738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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