View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_19 (Length: 383)
Name: NF16112_low_19
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 837301 - 837652
Alignment:
| Q |
20 |
ctgcttctccaccgccaaacagaccttctagcatctgattatgcgggaacatccttccgtagaatgtaattttcctttttgggttccaataataaattga |
119 |
Q |
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| T |
837301 |
ctgcttctccaccgccaaacagaccttctagcatctgattatgcgggaacatccttccgtagaatgtaattttcctttttgggttccaataataaattga |
837400 |
T |
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| Q |
120 |
ccacgagaaaaatatcatttaagcccccctaacaaagtcgtactatatgcggccacatagaaaacctataaatagcgtgctagggtttttagcttttcct |
219 |
Q |
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| T |
837401 |
ccacgagaaaaatatcatttaagcccccctaacaaagtcgtactatatacggtcacatagaaaacctataaatagcgtgctagggtttttagcttttcct |
837500 |
T |
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| Q |
220 |
atttatatttcatgttttcttaacgtcccagggttctatctgaacaacagagactgcatgctccatggatgttatcgtccaaatactctctttgcttcct |
319 |
Q |
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| T |
837501 |
atttatatttcatgttttcttaacgtccgagggttctatctaaacaacagagac----tgctccatggatgttatcgtccaaatactctctttgctccct |
837596 |
T |
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| Q |
320 |
gttaaatctctcctgaggttcaggtgcgttgacaaatctttcgatactttcatctc |
375 |
Q |
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| T |
837597 |
gttaaatctctcctgaggttcaggtgcgttgacaaatctttcgatactctcatctc |
837652 |
T |
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