View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_25 (Length: 361)
Name: NF16112_low_25
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 11349650 - 11349779
Alignment:
| Q |
1 |
tattatgtaccaaattacttgttatgtggatggactaaagagtttttgagtctttgttacaatcaagcatggatcatcaaattatgttgtaataatgaag |
100 |
Q |
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| T |
11349650 |
tattatgaaccaaattacttgttatgtggatggattaacgagtttttgagtctttgttacaatcaagcatggatcatcaaattatgttgtaataatgaag |
11349749 |
T |
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| Q |
101 |
atattcgtgtgtcaaatgatattttagaac |
130 |
Q |
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| T |
11349750 |
ctattcgtgtgtcaaaggatattttagaac |
11349779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 11350052 - 11350173
Alignment:
| Q |
9 |
accaaattacttgttatgtggatggactaaagagtttttgagtctttgttacaatcaagcatggatcatcaaattatgttgtaataatgaagatattcgt |
108 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
11350052 |
accaaattacttgttatgtggatggattaaagagtttttgagtctttgttacaatcaagcatgggtcatcaaattatgttgtaataatgaagctattcgt |
11350151 |
T |
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| Q |
109 |
gtgtcaaatgatattttagaac |
130 |
Q |
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| T |
11350152 |
gtgtcaaatgatattttagaac |
11350173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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