View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_27 (Length: 351)
Name: NF16112_low_27
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 24 - 321
Target Start/End: Complemental strand, 15685263 - 15684965
Alignment:
| Q |
24 |
gtgtctataaaaccttcgaatctctaataatnnnnnnnctttgttaatgtactaa-tagatgggcatgatatatttttatgaagtaaatactaatgttta |
122 |
Q |
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| T |
15685263 |
gtgtctataaaaccttcgaatctctaataataaaaaaactttgttaatgtactaaatagatggtcatgatatgtttttatgaagtaaatactaatgttta |
15685164 |
T |
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| Q |
123 |
aaaatttgaaccaaaacaaaaggattaattggttgagttatgaatcaatattctcaatgatttaaatattgttattgtaattagaattcattttcattgt |
222 |
Q |
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| T |
15685163 |
aaaatttgaaccgaaacaaaaggattaattggtcgagttatgaatcaatattctcaatgatttaaatattgctattgtaattagaatttattttcattat |
15685064 |
T |
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| Q |
223 |
gattaaaattatgtaatgaattgaaccataactttgtggtctcattggtttatatctaaataattattaaaatatgagcaaacacaattttgtcttaaa |
321 |
Q |
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| T |
15685063 |
gattaaaattgtgtaatgaattgaaccataactttgtggtctcattggtttatatctaaataattgttaaaatatgagcaaacacaattttgtcttaaa |
15684965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 91 - 313
Target Start/End: Complemental strand, 15620846 - 15620627
Alignment:
| Q |
91 |
atatatttttatgaagtaaatactaatgtttaaaaatttgaaccaaaacaaaaggattaattggttgagttatgaatcaatattctcaatgatttaaata |
190 |
Q |
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| T |
15620846 |
atatgttttcatgaagtaaatactaatgttaaaaaacg-gaatcaaatccaaaagataaattggctgagttatgaatcaatattctcaatgattta---a |
15620751 |
T |
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| Q |
191 |
ttgttattgtaattagaattcattttcattgtgattaaaattatgtaatgaattgaaccataactttgtggtctcattggtt-tatatctaaataattat |
289 |
Q |
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| T |
15620750 |
ttgctattgtaattagatttcattttcattgtgatcaaaatagtataatgtgtggaaccataactttcgggtctcaccggttctaaatctaaataattat |
15620651 |
T |
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| Q |
290 |
taaaatatgagcaaacacaatttt |
313 |
Q |
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| T |
15620650 |
aaaaatatgggtaaacacaatttt |
15620627 |
T |
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