View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_30 (Length: 347)
Name: NF16112_low_30
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 334
Target Start/End: Complemental strand, 53491916 - 53491601
Alignment:
| Q |
19 |
catctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaacta |
118 |
Q |
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| T |
53491916 |
catctttggcatctgtaatgagtatttgaggcctttcctcctgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaacta |
53491817 |
T |
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| Q |
119 |
cccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattc |
218 |
Q |
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| T |
53491816 |
cccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattc |
53491717 |
T |
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| Q |
219 |
tactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagat |
318 |
Q |
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| T |
53491716 |
tactcgaactgtaagcttttaatgtctagagtatacatgaatggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagat |
53491617 |
T |
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| Q |
319 |
tggagcgatgatgatg |
334 |
Q |
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| T |
53491616 |
tggagcgatggtgatg |
53491601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 60 - 334
Target Start/End: Complemental strand, 53499468 - 53499194
Alignment:
| Q |
60 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
159 |
Q |
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| T |
53499468 |
tgttcagttttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgcttgggacaaaagtttgctgaaaagttcgaggta |
53499369 |
T |
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| Q |
160 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
259 |
Q |
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| T |
53499368 |
aaatttgaagataagaagggagagaaagcaatggtttggcagaactcatggggctattctactcgaactgtaagcttttaatgtctagagtatacatgaa |
53499269 |
T |
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| Q |
260 |
tggaaggattcctcttatgtacgattgcatttatatttttgtccgcttttttaacagattggagcgatgatgatg |
334 |
Q |
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|||||| | |||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| ||||| |
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| T |
53499268 |
tggaagaactccttttatgtacgattgcatttatattttagtccgcttatttaacagattggagcaatggtgatg |
53499194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 60 - 246
Target Start/End: Complemental strand, 16070576 - 16070390
Alignment:
| Q |
60 |
tgttcaattttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggta |
159 |
Q |
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||||||||||| |||||| ||||||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||| ||| || |
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| T |
16070576 |
tgttcaatttttctaggcttttattccaaacattggtcgtgggatacaaggtgcagctacccattgtttgggacaaaagtttgctgagaagtttgagata |
16070477 |
T |
|
| Q |
160 |
aaatttgaagatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttttaatgtcta |
246 |
Q |
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| T |
16070476 |
aactttgaagataagaaggtagagaaaacaatggtttggcagaactcatgggggttttctactcgaactgtaagctttcaatgtcta |
16070390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 69 - 237
Target Start/End: Original strand, 45354908 - 45355076
Alignment:
| Q |
69 |
ttcctaggcatttattccaaacactggttgtgggatacaaggtgcaactacccattgtttgagacaaaagtttgctgaaaagttcgaggtaaaatttgaa |
168 |
Q |
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|||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||| ||||||| |||||| ||| ||| ||| |||| | |||| |
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| T |
45354908 |
ttcctaggcatttattccaaacactggtcgtggtatacaaggtgcaacttctcattgtttgggacaaaattttgctaaaatgtttgagataaactatgaa |
45355007 |
T |
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| Q |
169 |
gatatgaagggagagaaagcaatggtttggcagaattcatggggctattctactcgaactgtaagcttt |
237 |
Q |
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|| ||||||||||||||||||||| |||||||| || |||| |||| ||||||||||||||||||| |
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| T |
45355008 |
aatgagaagggagagaaagcaatggtctggcagaactcgtgggcctatagtactcgaactgtaagcttt |
45355076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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