View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_33 (Length: 345)

Name: NF16112_low_33
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_33
NF16112_low_33
[»] chr1 (2 HSPs)
chr1 (1-345)||(18315789-18316133)
chr1 (94-345)||(18312366-18312617)
[»] scaffold1880 (1 HSPs)
scaffold1880 (44-345)||(559-860)
[»] scaffold1462 (1 HSPs)
scaffold1462 (1-345)||(905-1244)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 18316133 - 18315789
Alignment:
Q  1 gacaggattgactggcagtcctcgttgctacgagtaacaagcttaaaatcaagagtgcgtagtgcaattgaatcatcacgaagatcggaaaacctagaaa 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18316133 gacaggattgactggcagtcctcgttactacgagtaacaagcttaaaatcaagagtgcgtagtgcaattgaatcatcacgaagatcggaaaacctagaaa 18316034  T
Q  101 ggaatgtggatagcttatatgaagtggaaaattgagttgaatccaatgtaagtgatggaannnnnnnccagagattttcccatctcttagataaaacgcc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||     
T  18316033 ggaatgtggatagcttatatgaagtggaaaattgagttgaatccaatgtaagtgatggaatttttttccagagattttcccatctcttagataaaaggca 18315934  T
Q  201 agtttgaacagcgattttggcatccaaataagataaaatatgaataataatgcaatcagataattcactaatcatatcttcattattattgcttcttcct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18315933 agtttgaacagcgattttggcatccaaataagataaaatatgaatgataatgcaatcagataattcactaatcatatcttcattattattgcttcttcct 18315834  T
Q  301 cttttgggtatcggtggaaccattatcttaactgcaaaataattt 345  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  18315833 cttttgggtatcggtggaaccattatcttaactgcaaaataattt 18315789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 94 - 345
Target Start/End: Complemental strand, 18312617 - 18312366
Alignment:
Q  94 ctagaaaggaatgtggatagcttatatgaagtggaaaattgagttgaatccaatgtaagtgatggaannnnnnnccagagattttcccatctcttagata 193  Q
    ||||||| |||| |||||||||||| |||||| ||||||| |||||||   |||||||| |||||||       ||| | || || ||||||||| | ||    
T  18312617 ctagaaatgaatatggatagcttatctgaagttgaaaattcagttgaagtgaatgtaagagatggaatttgtttcca-atatctttccatctctttggta 18312519  T
Q  194 aaacgccagtttgaacagcgattttggcatccaaataagataaaatatgaata-ataatgcaatcagataattcactaatcatatcttcattattattgc 292  Q
    |||||| |||||||||||| ||| ||| ||||| ||||| ||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||| |    
T  18312518 aaacgcaagtttgaacagcaattctggtatccagataagttaaaatatgaatggataatgcaatcagataattcactaatcatatcttccttattatttc 18312419  T
Q  293 ttcttcctcttttgggtatcggtggaaccattatcttaactgcaaaataattt 345  Q
    |||||||||||| || |||||||||||||||||||  ||||||||||||||||    
T  18312418 ttcttcctctttcggatatcggtggaaccattatcacaactgcaaaataattt 18312366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1880 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1880
Description:

Target: scaffold1880; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 44 - 345
Target Start/End: Original strand, 559 - 860
Alignment:
Q  44 taaaatcaagagtgcgtagtgcaattgaatcatcacgaagatcggaaaacctagaaaggaatgtggatagcttatatgaagtggaaaattgagttgaatc 143  Q
    |||||||||||||| | |||||| |||||||||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||||||||||||||      
T  559 taaaatcaagagtgtgcagtgcagttgaatcatcgcgaagatctgaaaacctagaaaggaatgtggaaaacttatatgaagtggaaaattgagttgaaat 658  T
Q  144 caatgtaagtgatggaannnnnnnccagagattttcccatctcttagataaaacgccagtttgaacagcgattttggcatccaaataagataaaatatga 243  Q
    ||||||||||||||  |       ||||| || || ||||||||| |||||||||| |||| ||||||||||||||| || |||||||||||||||||||    
T  659 caatgtaagtgatgacatttttttccagatatctttccatctctttgataaaacgcaagttcgaacagcgattttggtattcaaataagataaaatatga 758  T
Q  244 ataataatgcaatcagataattcactaatcatatcttcattattattgcttcttcctcttttgggtatcggtggaaccattatcttaactgcaaaataat 343  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||| ||||||||||||||    
T  759 atgataatgcaatcagataattcactaatcatatcttcattattatttcttcttcctcttttgggtatcagtggaaccattgtctcaactgcaaaataat 858  T
Q  344 tt 345  Q
    ||    
T  859 tt 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1462 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 1244 - 905
Alignment:
Q  1 gacaggattgactggcagtcctcgttgctacgagtaacaagcttaaaatcaagagtgcgtagtgcaattgaatcatcacgaagatcggaaaacctagaaa 100  Q
    ||||||||||||||||||||||| || |||| ||||||||| || |||||||||||| |||     ||||||||||||||||||| ||||||||||||||    
T  1244 gacaggattgactggcagtcctcattactactagtaacaaggttcaaatcaagagtgtgta-----attgaatcatcacgaagataggaaaacctagaaa 1150  T
Q  101 ggaatgtggatagcttatatgaagtggaaaattgagttgaatccaatgtaagtgatggaannnnnnnccagagattttcccatctcttagataaaacgcc 200  Q
    ||||| ||||  |||||| |||||  |||||||||||||||   |||||||| |||||||       ||||| || || ||||||||| ||||||| ||     
T  1149 ggaatatggactgcttatctgaaggtgaaaattgagttgaagtgaatgtaagagatggaatttgtttccagatatctttccatctctttgataaaatgca 1050  T
Q  201 agtttgaacagcgattttggcatccaaataagataaaatatgaataataatgcaatcagataattcactaatcatatcttcattattattgcttcttcct 300  Q
    |||||||||||| |||| || ||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1049 agtttgaacagcaatttgggaatccaaataagataaaattagaatgataatgcaatcagataattcactaatcatatcttcattattatttcttcttcct 950  T
Q  301 cttttgggtatcggtggaaccattatcttaactgcaaaataattt 345  Q
    |||||||||||||||||||||||| | | ||||||||||||||||    
T  949 cttttgggtatcggtggaaccattgtatcaactgcaaaataattt 905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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