View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_4 (Length: 669)

Name: NF16112_low_4
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_4
NF16112_low_4
[»] chr1 (1 HSPs)
chr1 (18-662)||(46260390-46261035)


Alignment Details
Target: chr1 (Bit Score: 594; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 18 - 662
Target Start/End: Original strand, 46260390 - 46261035
Alignment:
Q  18 ggttctgcacttgtggtttagcatacggttgtggaagatgatttctgaaacgaattggtctgtccagtaccacgatggtaggagattctccggcacgatt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  46260390 ggttctgcacttgtggtttagcatacggttgtggaagatgatttctgaaacgaattggtctgtccagtaccacgatggaaggagattctccggcacgatt 46260489  T
Q  118 ccggcgagtccggttgcgatttctcctaatccatcgttggagagagcgttgcagcgagaactccagggattgagattatcgcaattatcgaggatttctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46260490 ccggcgagtccggttgcgatttctcctaatccatcgttggagagagcgttgcagcgagaactccagggattgagattatcgcaattatctaggatttctt 46260589  T
Q  218 ggttgaagaatttcggtaaatcataaacgaaaattctaccggagctgcactcatcgttgtttatagtgggaatagaatccaatacagtgtagttttgaat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46260590 ggttgaagaatttcggtaaatcataaacgaaaattctaccggagctgcactcatcgctgtttatagtgggaatagaatccaatacagtgtagttttgaat 46260689  T
Q  318 tcttcttccaccatcaactacggcgagacgagtggggaagttgtggtgaggggcgggaattgaggcagggaatctacggaggttgaagaagaggaggatc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46260690 tcttcttccaccatcaactacggcgagacgagtggggaagttgtggtgaggggcgggaattgaggcagggaatctacggaggttgaagaagaggaggatc 46260789  T
Q  418 tggatgaagacgaagatgaggaaaatccatgctcgtggattttgaaggttgaaaagtgattgaaatgtggttttgaaggaggttttggtggtggagagtt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46260790 tggatgaagacgaagatgaggaaaatccatgctcgtggattttgaaggttgaaaagtgattgaaatgtggttttgaaggaggttttggtggtggagagtt 46260889  T
Q  518 tgaacggttgtgattccggtgagtggggaggtgatttaggaagcatgagaaagaagaatagaagaaatttccggcgaaattgaaccggaaattttggtgg 617  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46260890 tgaacggttgtgattccggcgagtggggaggtgatttaggaagcatgagaaagaagaatagaagaaatttccggcgaaattgaaccggaaattttggtgg 46260989  T
Q  618 a-nnnnnnnngcaggtggaaagtgtttatggttttgtgtgatgatg 662  Q
    |         ||||||||||||||||||||||||||||||| ||||    
T  46260990 atttttttttgcaggtggaaagtgtttatggttttgtgtgaagatg 46261035  T

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