View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_40 (Length: 300)

Name: NF16112_low_40
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_40
NF16112_low_40
[»] chr2 (1 HSPs)
chr2 (13-300)||(8930623-8930909)


Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 8930623 - 8930909
Alignment:
Q  13 aatattgatcactttttgggtcaaagggcatcaccctatatagcaaattggcagtgcgtaaactttgatgaaagtgaccagacaagttaaaaatacagtc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8930623 aatattgatcactttttgggtcaaagggcatcaccctatatagcaaattggcagtgcgtaaactttgatgaaagtgaccagacaagttaaaaatacagtc 8930722  T
Q  113 aggtagctgataagataagataaatatctgtatacttttcttgattgagcnnnnnnnaatatagaatgattttcttcttatgacaaattttgtctttgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  8930723 aggtagctgataagataagataaatatctgtatacttttcttgattgagctttttttaatatagaatgattttcttcttatgacaaattttgtctttgtt 8930822  T
Q  213 aaaatgtagtagcattagcatatatccatgcataaacagtaag-ttattatttgatagtagttgatgaacctgtggcaaatatgtgaat 300  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||    
T  8930823 aaaatgtagtagcattagc--atatccatgcataaacagtaagtttattatttgatagtagttgatgaacctgtgacaaatatgtgaat 8930909  T

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