View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16112_low_41 (Length: 300)

Name: NF16112_low_41
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16112_low_41
NF16112_low_41
[»] chr8 (1 HSPs)
chr8 (11-282)||(40053913-40054194)
[»] chr5 (1 HSPs)
chr5 (217-282)||(7524793-7524858)
[»] chr4 (3 HSPs)
chr4 (34-129)||(49109080-49109176)
chr4 (217-281)||(49533846-49533914)
chr4 (34-80)||(49534066-49534113)
[»] chr1 (2 HSPs)
chr1 (217-282)||(38175765-38175830)
chr1 (36-129)||(38175955-38176049)
[»] chr2 (2 HSPs)
chr2 (137-197)||(43849740-43849800)
chr2 (217-282)||(43849863-43849932)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 40053913 - 40054194
Alignment:
Q  11 caaaggcctaaacaacttcagcataatattatctgaattggtaaaagggaaattccatctgatgataatgtttaggaataaataaatttgtagtgtagaa 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40053913 caaaggcctaaacaacttcagcataatagtatctgaattggtaaaagggaaattccatctgatgataatgtttaggaataaataaatttgtagtgtagaa 40054012  T
Q  111 gactgacaagttattaagtcaagtaa--------attgtgaacatagccttcaacttgtgaaatatcataattactcaaaataaaattgtt--tgtgtgt 200  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  |||||||    
T  40054013 gactgacaagttattaagtcaagtaaattccctgattgtgaacatagccttcaacttgtgaaatatcatgattactcaaaataaaattgtttgtgtgtgt 40054112  T
Q  201 gtggcttgtcagttagtttaccattttgatactggaggcatcacgttaaaaatttaagggaaacgaaacttagcagcagata 282  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40054113 gtggcttctcagttaatttaccattttgatactggaggcatcacgttaaaaatataagggaaacgaaacttagcagcagata 40054194  T

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Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 7524793 - 7524858
Alignment:
Q  217 tttaccattttgatactggaggcatcacgttaaaaatttaagggaaacgaaacttagcagcagata 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7524793 tttaccattttgatactggaggcatcacgttaaaaatttaagggaaacgaaacttagcagcagata 7524858  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 49109176 - 49109080
Alignment:
Q  34 taatattatctgaattggtaaaa-gggaaattccatctgatgataatgtttaggaataaataaatttgtagtgtagaagactgacaagttattaagt 129  Q
    ||||||||||||||||| ||||| |||||||||||| |||||||| ||||||||||||||| ||||||| ||||| |||||| ||||||||||||||    
T  49109176 taatattatctgaattgataaaatgggaaattccatatgatgatagtgtttaggaataaatcaatttgtggtgtataagactcacaagttattaagt 49109080  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 49533914 - 49533846
Alignment:
Q  217 tttaccattttgatactggaggcatcacgttaaaaatt----taagggaaacgaaacttagcagcagat 281  Q
    ||||||||||| ||||||||||||||||||||||| ||    ||||||||||||||| |||||||||||    
T  49533914 tttaccattttaatactggaggcatcacgttaaaattttaagtaagggaaacgaaacatagcagcagat 49533846  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 49534113 - 49534066
Alignment:
Q  34 taatattatctgaattggtaa-aagggaaattccatctgatgataatg 80  Q
    ||||||||||||||||||||| | |||||||||| |||||||||||||    
T  49534113 taatattatctgaattggtaacaggggaaattccttctgatgataatg 49534066  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 38175830 - 38175765
Alignment:
Q  217 tttaccattttgatactggaggcatcacgttaaaaatttaagggaaacgaaacttagcagcagata 282  Q
    |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38175830 tttaccattttgatgccggaggcatcacgttaaaaatttaagggaaacgaaacttagcagcagata 38175765  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 36 - 129
Target Start/End: Complemental strand, 38176049 - 38175955
Alignment:
Q  36 atattatctgaattggtaaaaggg-aaattccatctgatgataatgtttaggaataaataaatttgtagtgtagaagactgacaagttattaagt 129  Q
    ||||||||||||||||||| |||| ||||||| ||||||||||||| || |||||||| |||||||||||||| |||| | | ||||||| ||||    
T  38176049 atattatctgaattggtaacaggggaaattccttctgatgataatgcttgggaataaagaaatttgtagtgtataagagtcataagttatcaagt 38175955  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 43849740 - 43849800
Alignment:
Q  137 attgtgaacatagccttcaacttgtgaaatatcataattactcaaaataaaattgtttgtg 197  Q
    ||||||||| ||||||||||||||||||||||||  |||||||||||||||||||| ||||    
T  43849740 attgtgaacgtagccttcaacttgtgaaatatcacgattactcaaaataaaattgtgtgtg 43849800  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 43849863 - 43849932
Alignment:
Q  217 tttaccattttgatactggaggcatcacgttaaaaatt----taagggaaacgaaacttagcagcagata 282  Q
    |||||||||||||||||||||||||||| |||||||||    ||||||| ||||||||||||||||||||    
T  43849863 tttaccattttgatactggaggcatcaccttaaaaatttaagtaagggatacgaaacttagcagcagata 43849932  T

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