View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_44 (Length: 289)
Name: NF16112_low_44
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_44 |
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| [»] scaffold0100 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 36335832 - 36335549
Alignment:
| Q |
1 |
ttggggcaccgaagttatattgagcataattgtacaaaacccaacaaacaagatgtcaccgttgttatatgtccactttgtgctaaaggggttcgcctaa |
100 |
Q |
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| T |
36335832 |
ttggggcaccgaagttatattgagcataattgtacaaaacccaacaaacaagatgtcaccgttgttatatgtccactttgtgctaaaggggttcgcctaa |
36335733 |
T |
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| Q |
101 |
ttccagaccaagatccaaacatagtttgggagcatcatgtcaacacagactgtgacccatcaaattatgaaaaagccacaaagaagaaaaagtgtcctgt |
200 |
Q |
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| T |
36335732 |
ttccagaccaagatccaaacatagtttgggagcatcatgtcaacacagactgtgatccatcaaattatgaaaaagccacaaagaagaaaaagtgtcctgt |
36335633 |
T |
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| Q |
201 |
cccaggatgcagagagaccttagtattctcaaacacaatcaagtgtagggactgtgaggttgaccattgtttgaagcacaggtt |
284 |
Q |
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| T |
36335632 |
cccaggatgcagagagaccttagtattctcaaacacaatcaagtgtagggactgtgaggttgaccattgtttgaagcacaggtt |
36335549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0100 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: scaffold0100
Description:
Target: scaffold0100; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 31 - 284
Target Start/End: Original strand, 40957 - 41210
Alignment:
| Q |
31 |
tgtacaaaacccaacaaacaagatgtcaccgttgttatatgtccactttgtgctaaaggggttcgcctaattccagaccaagatccaaacatagtttggg |
130 |
Q |
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||||||||| | |||| ||||||||||| || || |||||||||||||| |||||||| || |||||| |||| || ||||||||||||||| |||| |
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| T |
40957 |
tgtacaaaagctgacaagcaagatgtcactgtagtaatatgtccactttgcgctaaaggagtccgcctagttcctgagcaagatccaaacataacatggg |
41056 |
T |
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| Q |
131 |
agcatcatgtcaacacagactgtgacccatcaaattatgaaaaagccacaaagaagaaaaagtgtcctgtcccaggatgcagagagaccttagtattctc |
230 |
Q |
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| T |
41057 |
agaatcatgttaacaccgactgcgacccatcaaattatgagaaagttacaaagaagaaaaaatgccctgcagctggatgcaaagagatcttagtattctc |
41156 |
T |
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| Q |
231 |
aaacacaatcaagtgtagggactgtgaggttgaccattgtttgaagcacaggtt |
284 |
Q |
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| T |
41157 |
aaacacaattaaatgcaaggattgcacgatagaccattgtttgaagcataggtt |
41210 |
T |
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