View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_low_45 (Length: 286)
Name: NF16112_low_45
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_45 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 6284285 - 6284529
Alignment:
| Q |
13 |
aaaataaaaaatactatgtaatgggttgattcctagccaacaaaaagatttattcaaaaccgatctaataaggcttggttttggcttggttaaggtgagt |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6284285 |
aaaaaaaaaaatactatgtaatgggttgattcctagccaacaaaaagatttattcaaaaccgatctaataaagcttggttttggcttggttaaggtgagt |
6284384 |
T |
|
| Q |
113 |
ttaaatatctaagccaaatatctaataggagtttggatcattattaatgtgtatgtctatagtctaaggggtagtaattatgtttcagtgatgtggtaaa |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6284385 |
ttaaat-------------atctaataggagtttggatcattattaatgtgtatgtctatagtctaaggggtagtaattatgtttcagtgatgtggtaaa |
6284471 |
T |
|
| Q |
213 |
ataaaaatatcaataatcaatcctaattttgattctaaaagtatggaggtcgttgttg |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6284472 |
ataaaaatatcaataatcaatcctaattttgattctaaaagtatggaggtcgttgttg |
6284529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University