View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_48 (Length: 278)
Name: NF16112_low_48
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_48 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 39 - 267
Target Start/End: Complemental strand, 41305942 - 41305718
Alignment:
| Q |
39 |
aataaatttagagtatacaccaattgtaaacttatagtgagaatttaaaatgcatctaacttgcatctttacctaatcttacatagaaaaccaatagaga |
138 |
Q |
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| T |
41305942 |
aataaatttagagtatacaccaattgtaaacttatagtgagaatttaaaatacatctaacttgcatctttacctaatcttacatagaaaaccaatagaga |
41305843 |
T |
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| Q |
139 |
aaaatatatatatcttaatcctgcaaattagaactactgaagtaagcctgcaaaatgatccaaatgctttagcatatgttgattttgtatatcttgacag |
238 |
Q |
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| T |
41305842 |
aaaatatat----cttaatcctgcaaattagaactactgaagtaagcctgcaaaatgatccaaaggctttagcatatgttgattttgtatatcttgacag |
41305747 |
T |
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| Q |
239 |
tttctctatttttaaggtacattattcat |
267 |
Q |
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| T |
41305746 |
tttctctatttttaaggtacattattcat |
41305718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 223
Target Start/End: Complemental strand, 41333804 - 41333730
Alignment:
| Q |
150 |
atcttaatcctg-caaattagaactactgaagtaagcctgcaaaatgatccaaatgctttagcatatgttgattt |
223 |
Q |
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| T |
41333804 |
atcttaatccttacaaattaaacctactaaaataggcgtgcaaaataatgcaaatgctttagcatatgttgattt |
41333730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 41312073 - 41312037
Alignment:
| Q |
187 |
tgcaaaatgatccaaatgctttagcatatgttgattt |
223 |
Q |
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| T |
41312073 |
tgcaaaatgatgcaaatgctttaacatatgttgattt |
41312037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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