View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16112_low_52 (Length: 256)
Name: NF16112_low_52
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_52 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 45745379 - 45745237
Alignment:
| Q |
16 |
gtatgggcagtggttgatgtttctgttgagattggtcatgatccttctaatgcacaaccattcataagctgtagaagacttccttctggctgtattgtgc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45745379 |
gtatgggcagtggttgatgtttctgttgagattggtcatgatccttctaatgcacaaccattcataagctgcagaagacttccttctggctgtattgtgc |
45745280 |
T |
|
| Q |
116 |
aggatatgccaaatggttactccaaggtaagtgctaatccaag |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45745279 |
aggatatgccaaatggttactccaaggtaagtgctaatccaag |
45745237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 45745174 - 45745146
Alignment:
| Q |
220 |
atagtgactgctctatctaaatagaataa |
248 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
45745174 |
atagtgactgctctatctaaatagaataa |
45745146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 12325558 - 12325507
Alignment:
| Q |
94 |
cttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaa |
145 |
Q |
| |
|
||||| ||||| ||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12325558 |
cttccctctggttgtgttgtgcaagatatgccaaatggttactccaaggtaa |
12325507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 28597423 - 28597362
Alignment:
| Q |
84 |
ctgtagaagacttccttctggctgtattgtgcaggatatgccaaatggttactccaaggtaa |
145 |
Q |
| |
|
|||||| || ||||||||||| ||| | || || |||||||||||||||||||| ||||||| |
|
|
| T |
28597423 |
ctgtaggaggcttccttctggttgtgtggttcaagatatgccaaatggttactctaaggtaa |
28597362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University