View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_55 (Length: 249)
Name: NF16112_low_55
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_55 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 750169 - 749934
Alignment:
| Q |
1 |
cagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttt-gataaccttgatagtatgcaca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
750169 |
cagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagatttttgataaccttgatagtatgcaca |
750070 |
T |
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| Q |
100 |
aattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgattattcttgttgaatga |
199 |
Q |
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| T |
750069 |
aattcaaattgacaataaccattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgattattcttgttgaatga |
749970 |
T |
|
| Q |
200 |
ttaatgtgaaaatgaaagttttgaatattttggtat |
235 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
749969 |
ttaatgtgaaaatgaaagttttgaatattttggtat |
749934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 85 - 235
Target Start/End: Complemental strand, 675485 - 675335
Alignment:
| Q |
85 |
ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacggtctacaagataactgatt |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
675485 |
ttgatagtatgcacaaattcaaattgacaataaacattaaagtttttatgttttagcttttgtttgtgatagtgggtaacagtctacaagataactgatt |
675386 |
T |
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| Q |
185 |
attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtat |
235 |
Q |
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| T |
675385 |
attcttgttgaatgattaatgtgaaaatgaaagttttgaatattttggtat |
675335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 678991 - 678900
Alignment:
| Q |
1 |
cagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagt |
92 |
Q |
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| T |
678991 |
cagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagt |
678900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 230
Target Start/End: Original strand, 2485112 - 2485259
Alignment:
| Q |
87 |
gatagtatgcacaaattcaaattgacaataaacat---taaagtttttatgttttagct-tttgtttgtgatagtgggtaacggtctacaagataactga |
182 |
Q |
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|||||||| |||||||||||||||||||||| | | || ||||||| ||||||| || ||| || |||||||| ||| || |||||||||||||| |
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| T |
2485112 |
gatagtattcacaaattcaaattgacaataaccttggctacagtttttttgttttatctctttccttttgatagtgtttaatggattacaagataactga |
2485211 |
T |
|
| Q |
183 |
ttattcttgttgaatgattaatgtgaaaatgaaagttttgaatatttt |
230 |
Q |
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| T |
2485212 |
ttattcttgttgaatgtttaatgcaaaaatgaaagttttgtatatttt |
2485259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 1429766 - 1429705
Alignment:
| Q |
54 |
tcttacgatttgaatcgagattttgataaccttgatagtatgcacaaattcaaattgacaat |
115 |
Q |
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| T |
1429766 |
tcttacgatttaaatcgtgattttgaaaaccttgatatcatgcacaaattcaaattgacaat |
1429705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 7332309 - 7332267
Alignment:
| Q |
72 |
gattttgataaccttgatagtatgcacaaattcaaattgacaa |
114 |
Q |
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| T |
7332309 |
gattttggtaaccttgatagtatgcactaattcaaattgacaa |
7332267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 2495517 - 2495567
Alignment:
| Q |
177 |
aactgattattcttgttgaatgattaatgtgaaaatgaaagttttgaatatttt |
230 |
Q |
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| T |
2495517 |
aactgattattcttg---aatgattaatgtgaaaacgaaagttttgtatatttt |
2495567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 2641951 - 2641906
Alignment:
| Q |
170 |
acaagataactgattattcttgttgaatgattaatgtgaaaatgaa |
215 |
Q |
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| T |
2641951 |
acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa |
2641906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 2649444 - 2649399
Alignment:
| Q |
170 |
acaagataactgattattcttgttgaatgattaatgtgaaaatgaa |
215 |
Q |
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| T |
2649444 |
acaagataacggtttcttcttgttgaatgattaatctgaaaatgaa |
2649399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 7332198 - 7332157
Alignment:
| Q |
172 |
aagataactgattattcttgttgaatgattaatgtgaaaatg |
213 |
Q |
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| T |
7332198 |
aagataactgtttattcttgttaaatgattaatctgaaaatg |
7332157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 2642065 - 2642017
Alignment:
| Q |
66 |
aatcgagattttgataaccttgatagtatgcacaaattcaaattgacaa |
114 |
Q |
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||||| |||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
2642065 |
aatcgtgattttgataacattgattgtatgcactgattcaaattgacaa |
2642017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 2006 - 2242
Alignment:
| Q |
1 |
cagcaagtgatcttgtacaggatttcttgtgtgggacaattaagatcacacgatcttacgatttgaatcgagattttgataaccttgatagtatgcacaa |
100 |
Q |
| |
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|||||| |||| ||||| |||| | ||||| ||||| ||||||||| || |||||||| |||| ||||| || |||||||||| |||||||||||||| |
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| T |
2006 |
cagcaaatgattttgtattggatctattgtgggggaccattaagatcgcatgatcttacaatttaaatcgtgactttgataaccctgatagtatgcacag |
2105 |
T |
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| Q |
101 |
attcaaattgacaataaacat--taaagttttt-atgttttagcttttgtttgt-gatagtgggtaacggtctacaagataactgattattcttgttgaa |
196 |
Q |
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|||||| || ||||| | ||| || |||||| ||||||||||| ||| || | ||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
2106 |
attcaagttaacaatgatcatcttatggttttttatgttttagctcttgcttcttgatagtgtttaatggattacaagataactgattattcttgttgaa |
2205 |
T |
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| Q |
197 |
tgattaatgtgaaaatgaaagttttgaatattttggt |
233 |
Q |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
2206 |
tgattaatgtcaaaatgaaagttttgtatattttggt |
2242 |
T |
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