View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16112_low_57 (Length: 246)
Name: NF16112_low_57
Description: NF16112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16112_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 34671585 - 34671809
Alignment:
| Q |
7 |
ttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggtcctttcacaagcgccttacagtggaaac |
106 |
Q |
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| T |
34671585 |
ttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggtcctttcacaagcgccttacagtggaaac |
34671684 |
T |
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| Q |
107 |
actggattttcaccgcagacgacgccatttgacatataggacaacgtaactgcaccactccaggtggtgcggagaagcaagtccggcaattggtacatcg |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34671685 |
actggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccactccaggtggtgcggagaagcaagtccggcaattggtacatcg |
34671784 |
T |
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| Q |
207 |
ctgcttgcgtgccacgggaggtttt |
231 |
Q |
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||||||||||||||||||||||||| |
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| T |
34671785 |
ctgcttgcgtgccacgggaggtttt |
34671809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 26965383 - 26965607
Alignment:
| Q |
7 |
ttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggtcctttcacaagcgccttacagtggaaac |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965383 |
ttacgatcagcatcaccaacatcaagaataacaaaacacagcggacacggaaactgcaccaaatcactcggtcctttcacaagcgccttacagtggaaac |
26965482 |
T |
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| Q |
107 |
actggattttcaccgcagacgacgccatttgacatataggacaacgtaactgcaccactccaggtggtgcggagaagcaagtccggcaattggtacatcg |
206 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965483 |
actggattttcaccgcagacgacgcgatttgacatataggacaaggtaactgcaccactccaggtggtgcggagaagcaagtccggcaattggtacatcg |
26965582 |
T |
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| Q |
207 |
ctgcttgcgtgccacgggaggtttt |
231 |
Q |
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||||||||||||||||||||||||| |
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| T |
26965583 |
ctgcttgcgtgccacgggaggtttt |
26965607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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